View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_10 (Length: 427)
Name: NF9712_low_10
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 29 - 381
Target Start/End: Original strand, 38511916 - 38512261
Alignment:
| Q |
29 |
tgttttgcctgttcagaaggtatatttatatatgactttagcaaatcacctaatgttgttgatgttcatctttcaaatttcaaaattcaatattcaatat |
128 |
Q |
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| T |
38511916 |
tgttttgcctgttcagaaggtatatttatatatgactttagcaaatcacctaatgttgttgatgttcatctttc-------aaaattcaatattcaatat |
38512008 |
T |
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| Q |
129 |
tggattccgcaaataaaaataagtaattcttagcttccaaattgacttcatctgtactgaaagatattggcaagactactaatgcttggaatcttcttca |
228 |
Q |
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| T |
38512009 |
tggattccgcaaataaaaataagcaattcttagcttccaaattgacttcatctgtactgaaagatattggcaagactactaatgcttggaatcttcttca |
38512108 |
T |
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| Q |
229 |
cataacgtggaatactgttgtgaatccatcaatttgttgagtttcactcatttcaacttcaaccactttttccgaaacaggagagttaatgtcagtagtt |
328 |
Q |
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| T |
38512109 |
cataacgtggaatactgttgtgaatccatcaatttgttgagtttcactcatttcaacttcaaccactttttccgaaacaggagagttaatgtcagtagtt |
38512208 |
T |
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| Q |
329 |
gtagttgccttcgcactttcaactgcaccaaaaacaactccatgcgtctctgc |
381 |
Q |
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| T |
38512209 |
gtagttgccttcgcactttcaactgcaccaaaaacaactccatgtgtcactgc |
38512261 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 427
Target Start/End: Complemental strand, 49766892 - 49766854
Alignment:
| Q |
389 |
cttccacttccacttctcgtcattgtccttcttcttctt |
427 |
Q |
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| T |
49766892 |
cttccacttccactactcgtcattgtccttcttcttctt |
49766854 |
T |
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