View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_12 (Length: 345)
Name: NF9712_low_12
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 44 - 321
Target Start/End: Original strand, 21222944 - 21223221
Alignment:
| Q |
44 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctcgaaatgtta |
143 |
Q |
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| T |
21222944 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctggaaatgtta |
21223043 |
T |
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| Q |
144 |
aggtaagaaaaaacacatcatcttttaatgaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttcatactaaaat |
243 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21223044 |
aggtaagaaaaaacacatcatcttttaattaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttcatactaaaat |
21223143 |
T |
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| Q |
244 |
gtctcaaccaattatggtcctttagttgttctatcttcatgatattgtgatatgtaagaaatataaaataaggtttag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21223144 |
gtctcaaccaattatggtcctttagttgttctatcttcatgatattgtgatatgtaagaaatataaaataaggtttag |
21223221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 44756523 - 44756577
Alignment:
| Q |
177 |
tcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttt |
231 |
Q |
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| T |
44756523 |
tcatttcagaattttcttaattttcatcaataagtgattttgtatttattttttt |
44756577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 44756280 - 44756337
Alignment:
| Q |
44 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga |
101 |
Q |
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| T |
44756280 |
tgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga |
44756337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 44756412 - 44756454
Alignment:
| Q |
114 |
aagcaccttgttcttgttctcgaaatgttaaggtaagaaaaaa |
156 |
Q |
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| T |
44756412 |
aagcaccttgttcttgttctggaactgttaaggtaagaaaaaa |
44756454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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