View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9712_low_14 (Length: 341)
Name: NF9712_low_14
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 20103570 - 20103244
Alignment:
| Q |
1 |
ttaattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20103570 |
ttaattggactttacttctctgccactgcactcatcatgttccttgctttactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattga |
20103471 |
T |
|
| Q |
101 |
agcttcttattggcttaagttctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaa |
200 |
Q |
| |
|
| |||||| |||| || |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20103470 |
aacttctttttgggtttagttctctcttcgtagccattgttgccatgttcatttgtttcattggtggacactactttgtgctcacagataaatataccaa |
20103371 |
T |
|
| Q |
201 |
aagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatcttctcaaagttatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20103370 |
gagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatcttctcaaagttatt |
20103271 |
T |
|
| Q |
301 |
ttgaagaaggtgccaccgccaagtatc |
327 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
20103270 |
ttgaagaaggtgccaccaccaagtatc |
20103244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 20079253 - 20078927
Alignment:
| Q |
1 |
ttaattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatga |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20079253 |
ttaattggactttacttctcggtcactgcactaatcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattga |
20079154 |
T |
|
| Q |
101 |
agcttcttattggcttaagttctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaa |
200 |
Q |
| |
|
| |||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20079153 |
aacttctttttgggttaagttctctcttcgtagccattgttgccatgttcatttctttcattgctggacactactttgtgctcacagataaatataccaa |
20079054 |
T |
|
| Q |
201 |
aagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatcttctcaaagttatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||| ||||||||| | |
|
|
| T |
20079053 |
gagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatggagttgtccagtttccattatatcttgatcttgtcaaagttact |
20078954 |
T |
|
| Q |
301 |
ttgaagaaggtgccaccgccaagtatc |
327 |
Q |
| |
|
| || |||||||||||| ||||||||| |
|
|
| T |
20078953 |
tggaggaaggtgccaccaccaagtatc |
20078927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 20130790 - 20130465
Alignment:
| Q |
1 |
ttaattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatga |
100 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||| |||||||| ||||||||| | |||||||||||||||||| || |||||||||||||| | | |
|
|
| T |
20130790 |
ttaattggagtttacttttctgtcactgcactcatcttgttcctttctatactcattgatcgaaaacaagtcgaagattttgatagaaacttgccactta |
20130691 |
T |
|
| Q |
101 |
agcttcttattggcttaagttctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaa |
200 |
Q |
| |
|
|||||||||||||| ||| |||| ||||| || ||||||||||| |||| |||||||| | || || | | || |||| ||||||||||||| |
|
|
| T |
20130690 |
agcttcttattggcctaacttctgtcttcgtatccattgtcgccgtgtttgtttctttctgtaccggccatttccttacgctctcggataaatataccat |
20130591 |
T |
|
| Q |
201 |
aagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatcttctcaaagttatt |
300 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||||| |||| |||||||| |||| ||||||| ||||||| |||||||| | |||||| || |
|
|
| T |
20130590 |
gggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcggttatatgttgatcttgttaaagttctt |
20130491 |
T |
|
| Q |
301 |
ttgaagaaggtgccaccgccaagtat |
326 |
Q |
| |
|
| ||||||||||||||| |||||||| |
|
|
| T |
20130490 |
tggaagaaggtgccaccaccaagtat |
20130465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 19903812 - 19904099
Alignment:
| Q |
1 |
ttaattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatga |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||| | |||||| |||||||||||| | ||||||||| ||||||| || | ||||||| | | |
|
|
| T |
19903812 |
ttaactggactttacttctctgtcacttcactcatggtattcctttctatactcacttgtagaaaacaagcaaaagactttggtaatatcttgccattta |
19903911 |
T |
|
| Q |
101 |
agcttcttattggcttaagttctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaa |
200 |
Q |
| |
|
|| || |||| | ||||| || |||||||||||||||| | |||||||| |||||||| ||| |||||| ||| || ||||| ||| |||||| ||| |
|
|
| T |
19903912 |
agttttttatggtcttaaattttctcttcatagccatttttgccatgttattttctttctttgctggacaataccttttgctcacagacaaatatgacaa |
19904011 |
T |
|
| Q |
201 |
aagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatctt |
288 |
Q |
| |
|
||| ||| |||||| ||||| | | ||||| || | | ||| ||| | ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
19904012 |
gagtagtagcttgttatatttctctcttgccggttccctccctgtcatgtactatgcatttctgcagtttccgttatatattgatctt |
19904099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23279784 - 23279848
Alignment:
| Q |
2 |
taattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaa |
66 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| | |||||||| | |||||||||||||||||| |
|
|
| T |
23279784 |
taattggtctttgtttctctgtcactgcactcgtaatgttcctgtccatactcacttctcgaaaa |
23279848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University