View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9712_low_15 (Length: 290)
Name: NF9712_low_15
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 7838722 - 7838993
Alignment:
| Q |
1 |
tttaaaaatattatttgtctgcaatttgcatgatgtggtcgagnnnnnnnnggtagggctagagaaagattgaacagttggcgatttggtaattgttttt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7838722 |
tttagaaatattatttgtctgcaatttgcatgatgtggtcgagtgttttttggtagggctagagaaagattgaacagttggcgatttggtaattgttttt |
7838821 |
T |
|
| Q |
101 |
tggatactttttaaatcgattgattaaaaaatactcaaaggacaattaactaccgtttaacatgttttaggtatttatgagcatttgttaagtgtttata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7838822 |
cggatactttttaaatcgattgattaaaaaatactcaaatgacaattaactaccgtttaacatgttttaggtatttatgagcatttcttaagtgtttata |
7838921 |
T |
|
| Q |
201 |
ttgaacaatcttcttacatttgctttagtgtatggccttttgctacctatgagtttttttgggggcaattag |
272 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7838922 |
ttgaacaatcttcttacatttgctcaagtgtatggccttttgctacctatgagttttttttggggcaattag |
7838993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 7844718 - 7844992
Alignment:
| Q |
1 |
tttaaaaatattatttgtctgcaatttgcatgatgtggtcgagnnnnnnnnggtagggctagagaaagattgaacagt---tggcgatttggtaattgtt |
97 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
7844718 |
tttagaaatattatttgtctgcaatttgcatgatgtggtcgagtgttttttggtagggttagaaaaagattgaacagcgcctggcgatttggtaattgtt |
7844817 |
T |
|
| Q |
98 |
ttttggatactttttaaatcgattgattaaaaaatactcaaaggacaattaactaccgtttaacatgttttaggtatttatgagcatttgttaagtgttt |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844818 |
tttcggatactttttaaatcgattgattaaaaaatactcaaatgacaattaactaccgtttaacatgttttaggtatttatgagcatttgttaagtgttt |
7844917 |
T |
|
| Q |
198 |
atattgaacaatcttcttacatttgctttagtgtatggccttttgctacctatgagtttttttgggggcaattag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7844918 |
atattgaacaatcttcttacatttgcttaagtgtatggccttttgctacctatgaattttttttggggcaattag |
7844992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 43218023 - 43217979
Alignment:
| Q |
126 |
aaaaaatactcaaaggacaattaactaccgtttaacatgttttag |
170 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43218023 |
aaaaaatactcaaatgacaattaactaccgttcaacatgttttag |
43217979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University