View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_16 (Length: 288)
Name: NF9712_low_16
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 52163750 - 52164009
Alignment:
| Q |
19 |
attacacatgtgttactgtcaaacacgcctttcatcacaggtagtgaattgaagatttgtcaagaatcaaaagaaaatggagtttgtaacagatcatagg |
118 |
Q |
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| T |
52163750 |
attacacatgtgttactttcaaacacgcctttcatcacaggtagtgaattgaagatttgtcaagaatcaaaagaaaatggagtttgtaacagatcatagg |
52163849 |
T |
|
| Q |
119 |
gtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163850 |
gtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg |
52163949 |
T |
|
| Q |
219 |
aagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163950 |
aagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatg |
52164009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 42171903 - 42171847
Alignment:
| Q |
162 |
tctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg |
218 |
Q |
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| T |
42171903 |
tctaagccaaggcttccctttcccactccaatgcaaaagactcaccggaccaggatg |
42171847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 78 - 278
Target Start/End: Original strand, 6634914 - 6635114
Alignment:
| Q |
78 |
tcaagaatcaaaagaaaatggagtttgtaacagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggttta |
177 |
Q |
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| T |
6634914 |
tcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggttta |
6635013 |
T |
|
| Q |
178 |
cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctat |
277 |
Q |
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||||| |||||||||||||| |||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
6635014 |
ccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctat |
6635113 |
T |
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| Q |
278 |
g |
278 |
Q |
| |
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| |
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| T |
6635114 |
g |
6635114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 15964232 - 15964347
Alignment:
| Q |
163 |
ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat |
262 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| | | |||||||| |||| |||||||||||||||||||||| |
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| T |
15964232 |
ctaacccaaggttttccttttccactccaatgcaataaactaacaggaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccat |
15964331 |
T |
|
| Q |
263 |
gttgattccacctatg |
278 |
Q |
| |
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|||||||||| ||||| |
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| T |
15964332 |
gttgattccatctatg |
15964347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 7266270 - 7266414
Alignment:
| Q |
130 |
gcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctac |
229 |
Q |
| |
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|||||||| |||||||| | | ||||||| | || |||| |||||||| |||||||||||||| | |||||||| || || ||||| | || | || |
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| T |
7266270 |
gcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaatgaagtaaactcaccgggcccggatgcaaatcccgac |
7266369 |
T |
|
| Q |
230 |
aaagaccacgaaaattatcaccaccaagtccatgttgattccacc |
274 |
Q |
| |
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|||| ||| | ||||||||||| ||||| |||||||||||||||| |
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|
| T |
7266370 |
aaagcccatggaaattatcaccgccaagcccatgttgattccacc |
7266414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 33346779 - 33346683
Alignment:
| Q |
178 |
cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacc |
274 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || ||||| | || | |||||| ||||||||||||||||| || || ||||| |||||||||| |
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| T |
33346779 |
ccttttccactccaatgcaacaaactcaccgggcctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccacc |
33346683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 2498502 - 2498608
Alignment:
| Q |
172 |
ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc |
271 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | |||||||| | || || ||||||||||||||| ||||||||||||| |
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| T |
2498502 |
ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc |
2498601 |
T |
|
| Q |
272 |
acctatg |
278 |
Q |
| |
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| ||||| |
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| T |
2498602 |
atctatg |
2498608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 27101090 - 27101196
Alignment:
| Q |
172 |
ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc |
271 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | |||||||| | || || ||||||||||||||| ||||||||||||| |
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| T |
27101090 |
ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc |
27101189 |
T |
|
| Q |
272 |
acctatg |
278 |
Q |
| |
|
| ||||| |
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|
| T |
27101190 |
atctatg |
27101196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 37500754 - 37500808
Alignment:
| Q |
168 |
ccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaaga |
222 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||| ||||| || ||||||||| |
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|
| T |
37500754 |
ccaaggtttacccttcccactccaatgaagcaaactaacaggcccaggatgaaga |
37500808 |
T |
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