View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_19 (Length: 259)
Name: NF9712_low_19
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5192932 - 5193168
Alignment:
| Q |
1 |
catggaaatccatgcaggtatatacgttagtaagaataacaatttccgtgagaataaagccactaaaagttagaactaggggaatctgtaggttactaga |
100 |
Q |
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| T |
5192932 |
catggaaatccatgcaggtatatacgttagtaagaatagcaatttccgtgagaataaagccactaaaagttagaactaggggaatctgtaggttactaga |
5193031 |
T |
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| Q |
101 |
ataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaaccaacatcaacatcatgctaaaagccaaaaacgaaaagcaggaaagtgaa |
200 |
Q |
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| T |
5193032 |
ataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaac------caacatcatgctaaaagccaaaaacgaaaagcacgaaagtgaa |
5193125 |
T |
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| Q |
201 |
tactcaatgttgctccattgtatatgttttagggtttattctt |
243 |
Q |
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| T |
5193126 |
tactcaatgttgctccattgtatatgttttagggtttattctt |
5193168 |
T |
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