View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_22 (Length: 250)
Name: NF9712_low_22
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33769054 - 33769289
Alignment:
| Q |
1 |
ccatccacagagaaacttccaaaactgcgcgagatgtaagatttttctatttaattgcaaaaacaagacattgtgttgtttttcttcattctactagcnn |
100 |
Q |
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| T |
33769054 |
ccatccacagagaaacttccaaaactgcgcgagatgtaagatttttctatttaattgcaaaaacaagacattgtgttgtttttcttcattctactagctt |
33769153 |
T |
|
| Q |
101 |
nnnnnnnncctgtgctaacaaatggtgtctgtgaaaccagttcttctgatatgctaaataaaaagtttgatgggaaagctaccaaacactaaagtgaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33769154 |
tttttta-cctgtgctaacaaatggtgtctgtgaaaccagttcttctgatatgctaaataaaaagtttgatgggaaagctaccaaacacta-----aagt |
33769247 |
T |
|
| Q |
201 |
gaagtccaagtaaatgcaacactacatttgtgtatctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
33769248 |
gaagtccaagtaaatgcaacactacatttgtgtgtctttgct |
33769289 |
T |
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