View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9712_low_25 (Length: 242)

Name: NF9712_low_25
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9712_low_25
NF9712_low_25
[»] chr2 (5 HSPs)
chr2 (17-242)||(7717729-7717947)
chr2 (17-221)||(7732324-7732522)
chr2 (117-213)||(7724920-7725016)
chr2 (17-70)||(7725060-7725113)
chr2 (164-210)||(32635903-32635949)
[»] chr6 (8 HSPs)
chr6 (140-211)||(6346852-6346923)
chr6 (148-211)||(2567476-2567539)
chr6 (145-208)||(7601333-7601396)
chr6 (164-211)||(9236064-9236111)
chr6 (145-211)||(2671090-2671156)
chr6 (165-211)||(8412591-8412636)
chr6 (167-213)||(13141317-13141363)
chr6 (165-212)||(4485584-4485632)
[»] chr7 (4 HSPs)
chr7 (145-211)||(24731754-24731820)
chr7 (145-213)||(2048407-2048475)
chr7 (145-211)||(7711356-7711422)
chr7 (165-210)||(5838553-5838598)
[»] chr5 (7 HSPs)
chr5 (145-211)||(15160422-15160488)
chr5 (151-211)||(4376623-4376683)
chr5 (145-208)||(19615031-19615094)
chr5 (150-212)||(19985028-19985091)
chr5 (165-211)||(30655195-30655241)
chr5 (152-197)||(11573594-11573639)
chr5 (150-213)||(9333565-9333629)
[»] chr4 (3 HSPs)
chr4 (145-211)||(2549295-2549361)
chr4 (150-213)||(4881073-4881137)
chr4 (180-217)||(48464068-48464105)
[»] chr8 (2 HSPs)
chr8 (165-218)||(29386509-29386562)
chr8 (145-211)||(8833532-8833598)
[»] chr1 (1 HSPs)
chr1 (149-213)||(3399654-3399719)
[»] chr3 (1 HSPs)
chr3 (145-209)||(36084521-36084585)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 7717947 - 7717729
Alignment:
Q  17 aaaacttggatgctttatcaactgggtgcaagaactctaatatattgatgctacctgnnnnnnnnnnnnnnncttctcccgatatgctaatcactatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |               |||||||| ||||||||||||||   ||    
T  7717947 aaaacttggatgctttatcaactgggtgcaagaactctaatatattgatgctaccagttttttatttttt--cttctccctatatgctaatcactg--gt 7717852  T
Q  117 ttaaaaagctcaaatcttctaccacttgaatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacatttttatt 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||   |||||    
T  7717851 ttaaaaagctcaaatcttctaccccttgaatcatttagtaacgtagattttacctaatatttattaaatattactaaatttaaatagtaaca---ttatt 7717755  T
Q  217 ttattatgttattaaatctcatatat 242  Q
    ||||||||||| ||||||||||||||    
T  7717754 ttattatgttactaaatctcatatat 7717729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 7732522 - 7732324
Alignment:
Q  17 aaaacttggatgctttatcaactgggtgcaagaactctaatatattgatgctacctgnnnnnnnnnnnnnnncttctcccgatatgctaatcactatagt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||                |||||   |||||||||||||| | |     
T  7732522 aaaacttggatgctttatcaactgggtgcatgaactctaatatattgttgctacttgttttttgtctttta--ttctctatatatgctaatcact-tcgc 7732426  T
Q  117 ttaaaaagctcaaatcttctaccacttgaatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacatttttatt 216  Q
    |||||||||||||| ||||||||||||||||||||||||||| | || |||||| |||||||||   |||||||||||||||||||||||||||||| ||    
T  7732425 ttaaaaagctcaaaccttctaccacttgaatcatttagtaacatagactttaccaaacatttat---atattactaaatttaaatagtaacatttttttt 7732329  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 7725016 - 7724920
Alignment:
Q  117 ttaaaaagctcaaatcttctaccacttgaatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattttt 213  Q
    |||||||| ||||||||| ||||| ||||||||||||||||   ||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7725016 ttaaaaaggtcaaatcttttaccaattgaatcatttagtaatacgggctttacgtaacatttatcaaatattactaaatttaaatagtaacattttt 7724920  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 7725113 - 7725060
Alignment:
Q  17 aaaacttggatgctttatcaactgggtgcaagaactctaatatattgatgctac 70  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7725113 aaaacttggatgctttatcaactgggtgcataaactctaatatattgatgctac 7725060  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 32635949 - 32635903
Alignment:
Q  164 ttttacctaacatttatcaaatattactaaatttaaatagtaacatt 210  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  32635949 ttttacctaacacttatcaaatattactaaatttaaatagtaacatt 32635903  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 6346852 - 6346923
Alignment:
Q  140 acttgaatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    |||| |||||||||||||| | |  ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6346852 acttaaatcatttagtaacataggctttacctaacatttatcaaatgttacaaaatttaaatagtaacattt 6346923  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 2567539 - 2567476
Alignment:
Q  148 catttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    |||||||||||  ||| |||||| |||||||||||||| |||| | || |||||||||||||||    
T  2567539 catttagtaacacggactttaccaaacatttatcaaatgttacaagatctaaatagtaacattt 2567476  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 7601333 - 7601396
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaaca 208  Q
    ||||||||||||||  ||| |||||||||||||| |||||| |||| | || ||||||||||||    
T  7601333 aatcatttagtaacacggactttacctaacatttgtcaaatgttacaagatctaaatagtaaca 7601396  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 9236111 - 9236064
Alignment:
Q  164 ttttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||| |||||| |||| ||||||||||||||| ||||    
T  9236111 ttttacctaacatttgtcaaatgttacaaaatttaaatagtaatattt 9236064  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 2671156 - 2671090
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||  ||  |||||||||||||| ||||||||||  | || |||||||||||||||    
T  2671156 aatcatttagtaacacgggctttacctaacatttgtcaaatattataagatctaaatagtaacattt 2671090  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 8412636 - 8412591
Alignment:
Q  165 tttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||    
T  8412636 tttatctaacatttatcag-tattactaaatttaaatagtaacattt 8412591  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 13141363 - 13141317
Alignment:
Q  167 tacctaacatttatcaaatattactaaatttaaatagtaacattttt 213  Q
    ||||||||||||||||||| |||| | || |||||||||||||||||    
T  13141363 tacctaacatttatcaaatgttacgagatctaaatagtaacattttt 13141317  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 4485584 - 4485632
Alignment:
Q  165 tttacctaacatttat-caaatattactaaatttaaatagtaacatttt 212  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| ||||||    
T  4485584 tttacctaacaattattcaaatattactaaatttaattagtaccatttt 4485632  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 24731754 - 24731820
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||| | || |||||||||||||||    
T  24731754 aatcatttagtaacatgggttttacctaacatttatcaaatgttacaagatctaaatagtaacattt 24731820  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 2048407 - 2048475
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattttt 213  Q
    |||||||||||||  |||| ||||||||||||| ||||||| |||| |||  |||||||||||||||||    
T  2048407 aatcatttagtaatatggactttacctaacattaatcaaatgttaccaaacctaaatagtaacattttt 2048475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 7711356 - 7711422
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||  ||  ||||||||||||| ||||||| |||| | || |||||||||||||||    
T  7711356 aatcatttagtaacacgggctttacctaacattcatcaaatgttacaagatctaaatagtaacattt 7711422  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 5838598 - 5838553
Alignment:
Q  165 tttacctaacatttatcaaatattactaaatttaaatagtaacatt 210  Q
    ||||||||||||||||||||| |||| | ||||| |||||||||||    
T  5838598 tttacctaacatttatcaaatgttacaagatttatatagtaacatt 5838553  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 15160488 - 15160422
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    |||||||||||||| |||  ||||||||||||||||||||| |||| | ||||||||||||||||||    
T  15160488 aatcatttagtaacatgggctttacctaacatttatcaaatgttacaagatttaaatagtaacattt 15160422  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4376683 - 4376623
Alignment:
Q  151 ttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||  ||| ||||||||||||||||||||| |||| | || |||||||||||||||    
T  4376683 ttagtaacacggactttacctaacatttatcaaatgttacaagatctaaatagtaacattt 4376623  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 19615031 - 19615094
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaaca 208  Q
    |||||||||||||| |||  |||||||||||||| |||||| |||| | || ||||||||||||    
T  19615031 aatcatttagtaacatgggctttacctaacatttgtcaaatgttacaagatctaaatagtaaca 19615094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 19985091 - 19985028
Alignment:
Q  150 tttagtaacgtggattttacctaacatttat-caaatattactaaatttaaatagtaacatttt 212  Q
    ||||||||| |||| ||||||||||| |||| ||||| ||||||||| ||| ||||||||||||    
T  19985091 tttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacatttt 19985028  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 30655195 - 30655241
Alignment:
Q  165 tttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||||||||| |||| | || |||||||||||||||    
T  30655195 tttacctaacatttatcaaatgttacaagatctaaatagtaacattt 30655241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 11573639 - 11573594
Alignment:
Q  152 tagtaacgtggattttacctaacatttatcaaatattactaaattt 197  Q
    |||||||  ||| |||||||||||||||||||||| ||||||||||    
T  11573639 tagtaacacggactttacctaacatttatcaaataatactaaattt 11573594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 9333565 - 9333629
Alignment:
Q  150 tttagtaacgtggattttacctaacattta-tcaaatattactaaatttaaatagtaacattttt 213  Q
    ||||||||| | || ||||||||||| ||  |||||| ||||||||||||| |||||||||||||    
T  9333565 tttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacattttt 9333629  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 2549361 - 2549295
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  2549361 aatcatttagtaacacgggttttacctaacatttgtcaaatattacaagatttaaatagtaacattt 2549295  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 4881073 - 4881137
Alignment:
Q  150 tttagtaacgtggattttacctaacatttat-caaatattactaaatttaaatagtaacattttt 213  Q
    |||||||||  ||| ||||||||||| |||| |||||||||||||||||||  ||||||||||||    
T  4881073 tttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacattttt 4881137  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 48464105 - 48464068
Alignment:
Q  180 tcaaatattactaaatttaaatagtaacatttttattt 217  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  48464105 tcaaatgttactaaatttaattagtaacatttttattt 48464068  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 29386562 - 29386509
Alignment:
Q  165 tttacctaacatttatcaaatattactaaatttaaatagtaacatttttatttt 218  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  29386562 tttacctaccatttatcaaatattactaaatctaaatagtaacatttttttttt 29386509  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 8833598 - 8833532
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacattt 211  Q
    ||||||||||||||  ||| || |||||||||||||||||| |||| | || |||||||||||||||    
T  8833598 aatcatttagtaacacggacttcacctaacatttatcaaatgttacaagatctaaatagtaacattt 8833532  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 3399719 - 3399654
Alignment:
Q  149 atttagtaacgtggattttacctaacatttat-caaatattactaaatttaaatagtaacattttt 213  Q
    |||||||||| | |||||||||||||| || | ||||| ||||||||||||| |||||||||||||    
T  3399719 atttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacattttt 3399654  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 36084585 - 36084521
Alignment:
Q  145 aatcatttagtaacgtggattttacctaacatttatcaaatattactaaatttaaatagtaacat 209  Q
    |||||||||||||| | |  |||||||||||||| |||||| |||| | || |||||||||||||    
T  36084585 aatcatttagtaacataggctttacctaacatttgtcaaatgttacgagatctaaatagtaacat 36084521  T

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