View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_27 (Length: 240)
Name: NF9712_low_27
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_27 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 7838427 - 7838650
Alignment:
| Q |
17 |
aaaagacataatacaaaagaaatgaaacatactcttgtgacaaaacggaggatgattgagactcccacttgatgctcataacgattgccctcctcttaaa |
116 |
Q |
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| T |
7838427 |
aaaagacataatacaaaagaaatgaaacatactcttgtgacaaaacggaggatgattgagactcccacttgatgctcataacgattgccctcctcttaaa |
7838526 |
T |
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| Q |
117 |
ctaccaacttctgaatgaatgttattgtgcagaatacaactcaaaattagttgtctactgcgattacagctcaaaattcccacattactcttcgccgccg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
7838527 |
ctaccaacttctgaatgaatgttattgtgcagaatacaactcaaaattagttgtctattgcggttacagctcaaaattcccacattactcttcgctgccg |
7838626 |
T |
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| Q |
217 |
tttgactactattaattttggatt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
7838627 |
tttgactactattaattttggatt |
7838650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 7844568 - 7844646
Alignment:
| Q |
162 |
attagttgtctactgcgattacagctcaaaattcccacattactcttcgccgccgtttgactactattaattttggatt |
240 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
7844568 |
attagttgtctgctgcgattacagctcaaaattcccacattactcttcgcctcagtttgactactattaattttggatt |
7844646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 3649354 - 3649483
Alignment:
| Q |
17 |
aaaagacataatacaaaagaaatgaaacatactcttgtgacaaaacggaggatgattgagactcccacttgatgctcataacgattgccctcctcttaaa |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3649354 |
aaaagacataatacaaaagaaatgaaaaatactcttgtgacaaaacggaggatgattgaggctcccacttgatgctcataacgattgccctcctcttaaa |
3649453 |
T |
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| Q |
117 |
ctaccaacttctgaatgaatgttattgtgc |
146 |
Q |
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| T |
3649454 |
ctaccaacttctgaatgaatgttattgtgc |
3649483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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