View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9712_low_29 (Length: 230)

Name: NF9712_low_29
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9712_low_29
NF9712_low_29
[»] chr2 (15 HSPs)
chr2 (93-196)||(7717371-7717474)
chr2 (107-191)||(7730559-7730643)
chr2 (109-196)||(7724682-7724770)
chr2 (17-76)||(20126184-20126243)
chr2 (17-76)||(27849383-27849442)
chr2 (17-76)||(27848335-27848394)
chr2 (17-78)||(3454445-3454506)
chr2 (17-65)||(33076254-33076302)
chr2 (17-76)||(24607779-24607838)
chr2 (17-68)||(26068898-26068949)
chr2 (27-64)||(33075197-33075234)
chr2 (147-194)||(7709543-7709590)
chr2 (27-77)||(3627613-3627663)
chr2 (17-79)||(20127351-20127413)
chr2 (17-79)||(42700946-42701008)
[»] scaffold0008 (1 HSPs)
scaffold0008 (17-76)||(268410-268469)
[»] chr7 (10 HSPs)
chr7 (17-76)||(16957261-16957320)
chr7 (17-76)||(42337068-42337127)
chr7 (20-76)||(7314252-7314308)
chr7 (17-76)||(40322552-40322611)
chr7 (17-77)||(35960202-35960262)
chr7 (25-77)||(40319549-40319601)
chr7 (28-78)||(40659001-40659051)
chr7 (25-75)||(42338158-42338208)
chr7 (17-70)||(38665825-38665878)
chr7 (17-81)||(46469135-46469199)
[»] chr3 (16 HSPs)
chr3 (17-78)||(6248453-6248514)
chr3 (17-79)||(6247380-6247442)
chr3 (25-77)||(37023816-37023868)
chr3 (17-77)||(37087111-37087171)
chr3 (17-76)||(40630625-40630684)
chr3 (25-79)||(40630014-40630068)
chr3 (25-75)||(50297319-50297369)
chr3 (17-76)||(50296205-50296264)
chr3 (26-75)||(17340468-17340517)
chr3 (17-73)||(17341497-17341553)
chr3 (25-77)||(38261303-38261355)
chr3 (17-76)||(38262340-38262400)
chr3 (17-77)||(45583256-45583316)
chr3 (25-76)||(45580107-45580158)
chr3 (17-76)||(52985129-52985188)
chr3 (17-76)||(52986249-52986308)
[»] scaffold0203 (3 HSPs)
scaffold0203 (17-76)||(9561-9620)
scaffold0203 (17-76)||(14935-14994)
scaffold0203 (25-80)||(16113-16168)
[»] chr8 (20 HSPs)
chr8 (22-76)||(14054117-14054171)
chr8 (17-75)||(23753259-23753317)
chr8 (17-79)||(45021647-45021709)
chr8 (28-76)||(28301659-28301707)
chr8 (27-76)||(36984145-36984194)
chr8 (17-76)||(26363594-26363653)
chr8 (20-75)||(44297816-44297871)
chr8 (17-76)||(45519490-45519549)
chr8 (20-84)||(39582001-39582066)
chr8 (27-76)||(44296719-44296768)
chr8 (28-76)||(28301343-28301391)
chr8 (25-76)||(14055460-14055511)
chr8 (26-77)||(22255572-22255623)
chr8 (17-76)||(26831442-26831501)
chr8 (17-75)||(1190969-1191027)
chr8 (17-75)||(35563484-35563542)
chr8 (17-75)||(45020585-45020643)
chr8 (17-78)||(6571323-6571384)
chr8 (32-65)||(23410074-23410107)
chr8 (17-53)||(4376206-4376242)
[»] scaffold1212 (1 HSPs)
scaffold1212 (27-76)||(2134-2183)
[»] chr6 (10 HSPs)
chr6 (17-78)||(15981018-15981079)
chr6 (17-77)||(15976610-15976670)
chr6 (17-76)||(20891805-20891864)
chr6 (27-75)||(3489369-3489417)
chr6 (25-77)||(14456199-14456251)
chr6 (17-77)||(20583015-20583075)
chr6 (18-72)||(15888974-15889028)
chr6 (17-75)||(20583974-20584032)
chr6 (18-79)||(3333070-3333131)
chr6 (17-70)||(14455033-14455086)
[»] chr4 (19 HSPs)
chr4 (17-76)||(1960894-1960953)
chr4 (17-76)||(1961170-1961229)
chr4 (17-75)||(56113755-56113813)
chr4 (17-70)||(6047068-6047121)
chr4 (17-76)||(56112694-56112753)
chr4 (17-65)||(40874056-40874104)
chr4 (17-76)||(22813287-22813346)
chr4 (28-75)||(34369664-34369711)
chr4 (25-76)||(34370773-34370824)
chr4 (25-78)||(18704417-18704470)
chr4 (27-76)||(39702670-39702719)
chr4 (17-70)||(46170304-46170356)
chr4 (25-62)||(46171481-46171518)
chr4 (17-70)||(52035150-52035203)
chr4 (20-76)||(10614802-10614858)
chr4 (17-77)||(10616088-10616148)
chr4 (27-83)||(22812625-22812681)
chr4 (26-70)||(31182622-31182666)
chr4 (28-76)||(34155897-34155945)
[»] chr1 (9 HSPs)
chr1 (17-76)||(16276964-16277023)
chr1 (17-65)||(22778637-22778685)
chr1 (17-76)||(5971085-5971144)
chr1 (25-78)||(1532581-1532634)
chr1 (17-70)||(29183455-29183508)
chr1 (20-76)||(31376528-31376584)
chr1 (17-76)||(1531634-1531693)
chr1 (17-76)||(16273729-16273788)
chr1 (17-70)||(43914912-43914965)
[»] chr5 (11 HSPs)
chr5 (17-78)||(12950057-12950118)
chr5 (25-77)||(4533131-4533183)
chr5 (17-77)||(42877081-42877141)
chr5 (17-76)||(183187-183246)
chr5 (27-76)||(2024305-2024354)
chr5 (17-78)||(12935900-12935961)
chr5 (17-78)||(29993320-29993381)
chr5 (17-78)||(38107137-38107198)
chr5 (25-65)||(4534070-4534110)
chr5 (17-76)||(2023331-2023390)
chr5 (25-75)||(5015134-5015184)
[»] scaffold0151 (3 HSPs)
scaffold0151 (17-77)||(38363-38423)
scaffold0151 (17-75)||(24806-24864)
scaffold0151 (17-75)||(37323-37381)
[»] scaffold0446 (1 HSPs)
scaffold0446 (17-76)||(11560-11619)
[»] scaffold0827 (1 HSPs)
scaffold0827 (17-75)||(3287-3345)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 7717371 - 7717474
Alignment:
Q  93 gagattaaaagcctcattttatattgctcttgatttggcccaatctagtctaacatatgaagatgctatatatgggagaaaagtgggggaactgccttta 192  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7717371 gagattaaaagcctcattttatattgcccttgatttggcccaatctagtcggacatatgaagatgctatatatgggagaaaagtgggggaactgccttta 7717470  T
Q  193 tggt 196  Q
    ||||    
T  7717471 tggt 7717474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 7730559 - 7730643
Alignment:
Q  107 cattttatattgctcttgatttggcccaatctagtctaacatatgaagatgctatatatgggagaaaagtgggggaactgccttt 191  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7730559 cattttatattactcttgatttggcccaatctagtcttacatatgaagatgctatatatgggagaaaaatgggggaactgccttt 7730643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 7724682 - 7724770
Alignment:
Q  109 ttttatattgctcttgatttggcccaatctagtctaacatatgaagatgctatatatgggagaaaagtgggg-gaactgcctttatggt 196  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7724682 ttttatattgctcttgatttggcccaatctaatcttacatatgaagatgctatatatgggagaaaaatggggagaactgcctttatggt 7724770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 20126243 - 20126184
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  20126243 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 20126184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 27849383 - 27849442
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  27849383 aatagggggctaaaattgcaacttttacaaacttaggaggtaaaaagtgagtttaagcct 27849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 27848394 - 27848335
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  27848394 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 27848335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 3454445 - 3454506
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||| ||||||||| |||||||| |||||||||| || |||| ||||||||||||||||    
T  3454445 aatagggggccaaaattacaacttttgcaaacttagggggcaaaaggtgcgttttagccttt 3454506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33076254 - 33076302
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtg 65  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  33076254 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 33076302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 24607779 - 24607838
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||| ||| |||||||||| || |||||||| ||||||||||    
T  24607779 aatagggggccaaaattgcaacctttgcaaacttagggggcaaaaagtgtgttttagcct 24607838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 26068949 - 26068898
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgt 68  Q
    ||||||| |||||||||||||||||| |||||||| | ||||||||||||||    
T  26068949 aatagggggccaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgt 26068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 33075234 - 33075197
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagt 64  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33075234 caaaattacaacttttacaaacttaggaggtaaaaagt 33075197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 7709543 - 7709590
Alignment:
Q  147 atatgaagatgctatatatgggagaaaagtgggggaactgcctttatg 194  Q
    ||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  7709543 atatgaagatgctatttatgggagaaaaatggaggaactgactttatg 7709590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 3627663 - 3627613
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||||||||| |||||||| | ||||||||||| |||| ||||||    
T  3627663 caaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagcctt 3627613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 20127351 - 20127413
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    ||||||| |||||||||||||| |||  ||||||| | |||||||||||| ||| ||||||||    
T  20127351 aatagggggccaaaattgcaacctttgtaaacttaaggggtaaaaagtgcatttaagccttta 20127413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 42701008 - 42700946
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    ||||||| | |||||||||||| ||| |||||||||| ||||||||||  |||| ||||||||    
T  42701008 aatagggggtcaaaattgcaacctttgcaaacttagggggtaaaaagtttgtttaagccttta 42700946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 268469 - 268410
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  268469 aatagggggccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagcct 268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 16957261 - 16957320
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  16957261 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 16957320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 42337127 - 42337068
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  42337127 aatagggtgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 42337068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 7314252 - 7314308
Alignment:
Q  20 agggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  7314252 agggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagcct 7314308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 40322552 - 40322611
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| ||||||||||||||||||||||| ||||  |||||||| ||||||| |||||    
T  40322552 aatagggggccaaaattgcaacttttacaaagttagagggtaaaaaatgcgtttaagcct 40322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 35960202 - 35960262
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| || ||||||||||||||| |||| ||||| ||||||||||| |||| ||||||    
T  35960202 aatagggggctaaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagcctt 35960262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 40319601 - 40319549
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||||||||||| |||| ||||  |||||||||||||||| ||||||    
T  40319601 gccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcctt 40319549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40659051 - 40659001
Alignment:
Q  28 aaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    |||||||||||||||  ||||||||| |||||||||| ||||| |||||||    
T  40659051 aaaattgcaacttttgtaaacttagggggtaaaaagtacgtttaagccttt 40659001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 42338158 - 42338208
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    |||||||||||||||||| |||||||||| || |||||||| |||| ||||    
T  42338158 gccaaaattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 38665878 - 38665825
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||||| ||||||||||||| | ||||| ||||| ||| ||||||||||||    
T  38665878 aatagggagtcaaaattgcaactatgacaaagttagggggtcaaaagtgcgttt 38665825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 46469199 - 46469135
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctttata 81  Q
    ||||||| || ||||||||||||||| |||||||| | |||| |||||| |||| ||||| ||||    
T  46469199 aatagggggctaaaattgcaacttttgcaaacttaaggggtagaaagtgtgtttaagcctatata 46469135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6248453 - 6248514
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  6248453 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccttt 6248514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 6247442 - 6247380
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    ||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  6247442 aatagggggtcaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccttta 6247380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 37023816 - 37023868
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  37023816 gccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcctt 37023868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37087171 - 37087111
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  37087171 aatagggtgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 37087111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 40630625 - 40630684
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||||  ||||||||    
T  40630625 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcct 40630684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 40630068 - 40630014
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    |||||||||||||||||| ||||||||   |||||||||||||||||||||||||    
T  40630068 gccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagccttta 40630014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 50297319 - 50297369
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  50297319 gccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcc 50297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 50296264 - 50296205
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||| | || ||||||||| |||||||||    
T  50296264 aatagggggccaaaattgcaacttttgcaaacttaaggggcaaaaagtgcattttagcct 50296205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 17340517 - 17340468
Alignment:
Q  26 ccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||||||    
T  17340517 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 17340468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 17341497 - 17341553
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttag 73  Q
    ||||||| | |||||||||||||| | |||||||||| || ||||||||||||||||    
T  17341497 aatagggggtcaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttag 17341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 38261355 - 38261303
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||||||||| | |||||||||| |  ||||||||||||||||||||    
T  38261355 gccaaaattgcaacttctgcaaacttaggggacaaaaagtgcgttttagcctt 38261303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 38262340 - 38262400
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggagg-taaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||| | |||||||||| ||  |||||||||||||||||||    
T  38262340 aatagggggccaaaattgcaacttctgcaaacttagggggcaaaaaagtgcgttttagcct 38262400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 45583256 - 45583316
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| |||||||||||||||||| |||||||||| | || |||||| |||| ||||||    
T  45583256 aatagggggccaaaattgcaacttttgcaaacttaggggttagaaagtgtgtttaagcctt 45583316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 45580158 - 45580107
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||||| ||||||||||  |||||||||| |||| |||||    
T  45580158 gccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcct 45580107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 52985188 - 52985129
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||  ||||||||| |||||||||||||||||  ||||||||||| |||| |||||    
T  52985188 aataggggaccaaaattgtaacttttacaaacttagagggtaaaaagtgtgtttaagcct 52985129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 52986249 - 52986308
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| | |||||||| ||||||||||||||||||  |||||||||| |||| |||||    
T  52986249 aatagggggtcaaaattgtaacttttacaaacttagggagtaaaaagtgtgtttaagcct 52986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9620 - 9561
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  9620 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 9561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 14994 - 14935
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  14994 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 14935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 16113 - 16168
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctttat 80  Q
    |||||||||||||| |||  ||||||| | |||||||||||||||| |||||||||    
T  16113 gccaaaattgcaacctttgtaaacttaaggggtaaaaagtgcgtttaagcctttat 16168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 14054171 - 14054117
Alignment:
Q  22 ggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  14054171 ggagccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 14054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 23753317 - 23753259
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  23753317 aatagggggccaaaattgcaacttttacaaacttagggggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 45021647 - 45021709
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  45021647 aatagggggtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagccttta 45021709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 28301659 - 28301707
Alignment:
Q  28 aaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  28301659 aaaattgcaacttttgcaaacttaggaggtaaaaagtgcgtttaagcct 28301707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 36984194 - 36984145
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  36984194 caaaattgcaacttttgcaaacttagtaggtaaaaagtgcgtttaagcct 36984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 26363594 - 26363653
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||| | |||| ||||| || |||||||||||||||||||    
T  26363594 aatagggggccaaaattgcaacttctgcaaatttagggggcaaaaagtgcgttttagcct 26363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 44297816 - 44297871
Alignment:
Q  20 agggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||| |||||||||||||||||||||||||||| ||| |||| ||||||| ||||    
T  44297816 agggaaccaaaattgcaacttttacaaacttagggggtgaaaaatgcgtttaagcc 44297871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 45519490 - 45519549
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||| ||||  |||||||||||||||| |||||    
T  45519490 aatagggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcct 45519549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 39582001 - 39582066
Alignment:
Q  20 agggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct-ttatattt 84  Q
    |||| |||||||||||||||||| ||||||||||  |||||||||| |||| ||||| ||||||||    
T  39582001 agggggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcctattatattt 39582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 44296768 - 44296719
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||| |||||||| | |||||||||||||||| |||||    
T  44296768 caaaattgcaacttttgcaaacttaaggggtaaaaagtgcgtttaagcct 44296719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 28301391 - 28301343
Alignment:
Q  28 aaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||||||||||| ||||| |||||||||||||||| |||| |||||    
T  28301391 aaaattgcaactttttcaaacataggaggtaaaaagtgtgtttaagcct 28301343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 14055460 - 14055511
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||||| |||||||||| |||| |||||| |||| |||||    
T  14055460 gccaaaattgcaacttttgcaaacttagggggtagaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 22255623 - 22255572
Alignment:
Q  26 ccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||||||||||||| |||||||||| ||  |||||||||||| ||||||    
T  22255623 ccaaaattgcaacttttgcaaacttagggggcgaaaagtgcgtttaagcctt 22255572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 26831442 - 26831501
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| ||||||||| | |||||| |||||||||| ||||||||||| |||| |||||    
T  26831442 aatagggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagcct 26831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 1191027 - 1190969
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||||||||||||||| |||||| |||||||||  ||| ||||||| |||| ||||    
T  1191027 aatagggagccaaaattgctacttttgcaaacttagagggtgaaaagtgagtttaagcc 1190969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 35563484 - 35563542
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    |||||||||| ||||||||||||||| ||||||||||  ||| ||| ||||||| ||||    
T  35563484 aatagggagctaaaattgcaacttttgcaaacttagggagtagaaaatgcgtttaagcc 35563542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 45020643 - 45020585
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| || ||||||||||||||| |||||||||  ||||||||||| |||| ||||    
T  45020643 aatagggggcaaaaattgcaacttttgcaaacttagagggtaaaaagtgagtttaagcc 45020585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 6571384 - 6571323
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||||  |||||||||||||||| |||||||| | | ||||||||| |||| |||||||    
T  6571384 aatagggaatcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagccttt 6571323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 23410074 - 23410107
Alignment:
Q  32 ttgcaacttttacaaacttaggaggtaaaaagtg 65  Q
    ||||||||||| ||||||||||||||||||||||    
T  23410074 ttgcaacttttgcaaacttaggaggtaaaaagtg 23410107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4376242 - 4376206
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttagg 53  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  4376242 aatagggagccaaaattgtaacctttacaaacttagg 4376206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 2183 - 2134
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 2134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15981018 - 15981079
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| |||||||    
T  15981018 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccttt 15981079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 15976670 - 15976610
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| | |||||||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  15976670 aatagggtgtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 15976610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 20891864 - 20891805
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||| | |||||||||| || |||||||| ||||||||||    
T  20891864 aatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgtgttttagcct 20891805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 3489369 - 3489417
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| | ||||||||||||||||| |||||||||||||||| ||||    
T  3489369 caaaattcctacttttacaaacttagggggtaaaaagtgcgtttaagcc 3489417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 14456199 - 14456251
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||| ||||||| ||||||| || |||||||||||||||| ||||||    
T  14456199 gccaaaattgtaacttttgcaaactttgggggtaaaaagtgcgtttaagcctt 14456251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 20583075 - 20583015
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| | |||||||||||||||| |||||||||| | ||||||||| |||| ||||||    
T  20583075 aatagggggtcaaaattgcaacttttccaaacttaggggataaaaagtgtgtttaagcctt 20583015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 15889028 - 15888974
Alignment:
Q  18 atagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgtttta 72  Q
    |||||| |||||||||||||| ||| |||||||||| || |||| ||||||||||    
T  15889028 atagggggccaaaattgcaacatttgcaaacttagggggcaaaacgtgcgtttta 15888974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 20583974 - 20584032
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| | |||||||||||||||| |||||||||  |||||||||| ||||| ||||    
T  20583974 aatagggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtacgtttaagcc 20584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 3333070 - 3333131
Alignment:
Q  18 atagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttta 79  Q
    |||||| |||||||| ||||||||| ||||||||| |||  ||||||||  |||||||||||    
T  3333070 atagggggccaaaatcgcaactttttcaaacttagaaggggaaaagtgcaatttagccttta 3333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 14455086 - 14455033
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||| ||||||||||| ||||||| ||||||||| | |||| |||||||||    
T  14455086 aatagggggccaaaattgctacttttagaaacttaggggataaatagtgcgttt 14455033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 1960953 - 1960894
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| ||||||||   ||||||||||||||||||||||    
T  1960953 aatagggtgccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagcct 1960894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 1961170 - 1961229
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||||  ||||||||    
T  1961170 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcct 1961229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 56113755 - 56113813
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| ||||    
T  56113755 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 6047121 - 6047068
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||    
T  6047121 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggttt 6047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 56112753 - 56112694
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| || ||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  56112753 aatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 56112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 40874056 - 40874104
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtg 65  Q
    |||||| ||||||||||||||||||| |||||||||| ||| |||||||    
T  40874056 aataggtagccaaaattgcaacttttgcaaacttagggggtgaaaagtg 40874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 22813287 - 22813346
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||  ||||||||||||||||| |||||||| ||||| ||||||| |||| |||||    
T  22813287 aataggggaccaaaattgcaacttttgcaaacttaagaggtcaaaagtgggtttaagcct 22813346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 34369711 - 34369664
Alignment:
Q  28 aaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    |||||| |||||||| |||||||||| || ||||||||||||||||||    
T  34369711 aaaattacaacttttgcaaacttagggggcaaaaagtgcgttttagcc 34369664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 34370773 - 34370824
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||||||||||||||  ||||||||| || |||| ||||||||||||||    
T  34370773 gccaaaattgcaacttttgtaaacttagggggcaaaaggtgcgttttagcct 34370824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 18704417 - 18704470
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||||||| |||||| |||| ||||| |||||| ||||||||| |||||||    
T  18704417 gccaaaattgctacttttgcaaaattagggggtaaatagtgcgtttaagccttt 18704470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 39702670 - 39702719
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||| ||||||||   || |||||||||||||||||||    
T  39702670 caaaattgcaacttttgcaaacttaacgggcaaaaagtgcgttttagcct 39702719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 46170356 - 46170304
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    |||||||| |||||||||||||||   |||||||||||||||||||||| ||||    
T  46170356 aataggga-ccaaaattgcaacttccgcaaacttaggaggtaaaaagtgggttt 46170304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 46171481 - 46171518
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaa 62  Q
    ||||||||||||||||||||||||||| || |||||||    
T  46171481 gccaaaattgcaacttttacaaacttaagaagtaaaaa 46171518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 52035150 - 52035203
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||| |||||||||||||||||| |||| ||| | ||||||||||| ||||    
T  52035150 aatagggggccaaaattgcaacttttgcaaatttaaggggtaaaaagtgggttt 52035203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 10614858 - 10614802
Alignment:
Q  20 agggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||| |||||||||||||||||| |||||||||  || |||| |||||||| |||||    
T  10614858 agggggccaaaattgcaacttttgcaaacttagagggcaaaatgtgcgtttaagcct 10614802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 10616088 - 10616148
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| | |||||||||||||||| |||| ||||| |||| |||||| |||| ||||||    
T  10616088 aatagggggtcaaaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcctt 10616148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 22812681 - 22812625
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctttatatt 83  Q
    |||||||||||||||| |||||||| | ||| ||||||| |||| |||||| |||||    
T  22812681 caaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagccttcatatt 22812625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 31182666 - 31182622
Alignment:
Q  26 ccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    |||||||| ||||||||||||||||||| | ||||||||| ||||    
T  31182666 ccaaaattacaacttttacaaacttaggggttaaaaagtgtgttt 31182622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 34155945 - 34155897
Alignment:
Q  28 aaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||  ||||||||| ||||||||||| |||| |||||    
T  34155945 aaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagcct 34155897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 16276964 - 16277023
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  16276964 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 16277023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 22778637 - 22778685
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtg 65  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  22778637 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 22778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 5971144 - 5971085
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| || ||||||||||||||| |||||||||| || ||||||||| |||||||||    
T  5971144 aatagggggctaaaattgcaacttttgcaaacttagggggcaaaaagtgcattttagcct 5971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 1532581 - 1532634
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    |||||||||||||||| | |||||||||| ||||||||||| |||| |||||||    
T  1532581 gccaaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagccttt 1532634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 29183455 - 29183508
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||| |||||||||||||||||| |||||||||  ||||||||||| ||||    
T  29183455 aatagggggccaaaattgcaactttttcaaacttagagggtaaaaagtgtgttt 29183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 31376584 - 31376528
Alignment:
Q  20 agggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||| |||||||||||||||||| |||||||||  ||| |||||||||||| |||||    
T  31376584 agggggccaaaattgcaacttttgcaaacttagagggtgaaaagtgcgtttaagcct 31376528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 1531693 - 1531634
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| | |||||||||||||||| ||||||||||  |||||||||| |||| |||||    
T  1531693 aatagggggtcaaaattgcaacttttgcaaacttagggagtaaaaagtgagtttaagcct 1531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 16273788 - 16273729
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| | |||||||||||||||| |||||||| | ||||||||||| |||| |||||    
T  16273788 aatagggggtcaaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagcct 16273729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 43914965 - 43914912
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttt 70  Q
    ||||||| |||||||||||||| ||| |||||||||| ||  ||||||||||||    
T  43914965 aatagggggccaaaattgcaacctttgcaaacttagggggcgaaaagtgcgttt 43914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 12950057 - 12950118
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    |||||||  ||| ||||||||||||| |||||||||| || |||||||||||||||||||||    
T  12950057 aataggggaccataattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccttt 12950118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 4533183 - 4533131
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  4533183 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 4533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 42877081 - 42877141
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| | ||||||| |||||||| |||||||| |||| ||||||||||||||||||||    
T  42877081 aatagggggtcaaaattacaacttttgcaaacttaagaggcaaaaagtgcgttttagcctt 42877141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 183187 - 183246
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| |||||||||||||||||| |||||||| | || |||||| ||||||||||||    
T  183187 aatagggggccaaaattgcaacttttgcaaacttaaggggcaaaaagcgcgttttagcct 183246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2024305 - 2024354
Alignment:
Q  27 caaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    |||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  2024305 caaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagcct 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 12935900 - 12935961
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    |||||||  ||| ||||||||||||| |||||||||| || ||||||||| |||||||||||    
T  12935900 aataggggaccataattgcaacttttgcaaacttagggggcaaaaagtgcattttagccttt 12935961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29993381 - 29993320
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||| ||||||||| |||||||| |||||||||  ||| |||||||||||| |||||||    
T  29993381 aatagggtgccaaaattacaacttttgcaaacttagagggttaaaagtgcgtttaagccttt 29993320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 38107198 - 38107137
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagccttt 78  Q
    ||||||| | ||||||||||| |||| ||||||||||||||||||||||  ||| |||||||    
T  38107198 aatagggggtcaaaattgcaatttttgcaaacttaggaggtaaaaagtggatttaagccttt 38107137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 4534070 - 4534110
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtg 65  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  4534070 gccaaaattgcaacttttgcaaacttagggggtaaaaagtg 4534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 2023390 - 2023331
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| ||||||||||||||||||  ||||||||| |||||| |||| |||| |||||    
T  2023390 aatagggggccaaaattgcaacttttgtaaacttagggggtaaatagtgggtttaagcct 2023331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 5015134 - 5015184
Alignment:
Q  25 gccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||||||||||||||||||||||| | | ||||||||| |||| ||||    
T  5015134 gccaaaattgcaacttttacaaacttaagggttaaaaagtgagtttaagcc 5015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 38363 - 38423
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcctt 77  Q
    ||||||| |||||||||||||||| | |||||||| | || ||||||||||||||||||||    
T  38363 aatagggggccaaaattgcaacttctgcaaacttaaggggcaaaaagtgcgttttagcctt 38423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 24864 - 24806
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| |||||||||||||||| | |||||||||| || ||||||| ||||||||||    
T  24864 aatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 24806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 37381 - 37323
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| |||||||||||||||| | |||||||||| || ||||||| ||||||||||    
T  37381 aatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 37323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 11619 - 11560
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcct 76  Q
    ||||||| || ||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  11619 aatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 11560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0827 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 3287 - 3345
Alignment:
Q  17 aatagggagccaaaattgcaacttttacaaacttaggaggtaaaaagtgcgttttagcc 75  Q
    ||||||| | |||||||||||||||| |||||||||   ||||||||||||||||||||    
T  3287 aatagggggtcaaaattgcaacttttgcaaacttagcgtgtaaaaagtgcgttttagcc 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University