View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_3 (Length: 459)
Name: NF9712_low_3
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 11178915 - 11179348
Alignment:
| Q |
19 |
gtacgaacctaaccgatttggacccaacgacacctgatacatttgactccaactactactccaatctccaagttggaaatggcttgtttcagagtgacca |
118 |
Q |
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| T |
11178915 |
gtacgaacctaaccgatttggacccaacgacacctgatacatttgactccaactactactccaatctccaagttggaaatggcttgtttcaaagtgacca |
11179014 |
T |
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| Q |
119 |
agagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaaattttgttgcttcaatgata |
218 |
Q |
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| T |
11179015 |
agagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaaattttgttgcttcaatgata |
11179114 |
T |
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| Q |
219 |
aaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaatgttgtgaatgggaattcttctggattggcttctgtagtca |
318 |
Q |
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| T |
11179115 |
aaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaatgctgtgaatgggaattcttctggattggcttctgtagtca |
11179214 |
T |
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| Q |
319 |
ccaaagaatcatcagaagatggaatggctagctcattctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtgt |
418 |
Q |
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| T |
11179215 |
ccaaagaatcatcagaagatggaatggctagctcattctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtgt |
11179314 |
T |
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| Q |
419 |
gtatgtggtggatcacgataattaatctctgctt |
452 |
Q |
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| T |
11179315 |
gtatgtggtggatcacgataattaatctctgctt |
11179348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 54 - 277
Target Start/End: Complemental strand, 11190935 - 11190712
Alignment:
| Q |
54 |
gatacatttgactccaactactactccaatctccaagttggaaatggcttgtttcagagtgaccaagagcttttttccacaaatggttctgacactattt |
153 |
Q |
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| T |
11190935 |
gatacattcgactcaaactactactccaatcttcaagctggaaatggtttgtttcagagtgatcaagagcttttttccacacctggtgctgataccattg |
11190836 |
T |
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| Q |
154 |
ctattgtcaatagtttcgccaataatcaaactctcttctttgaaaattttgttgcttcaatgataaaaatgggtaatattggagttttaactggatctca |
253 |
Q |
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| T |
11190835 |
ccattgttaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctccatgattaagatgggtaatattggagtgttaactggaactca |
11190736 |
T |
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| Q |
254 |
aggtgaaattagaacacaatgtaa |
277 |
Q |
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| T |
11190735 |
aggtgaagttagaacacactgtaa |
11190712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 277
Target Start/End: Complemental strand, 11183663 - 11183488
Alignment:
| Q |
102 |
ttgtttcagagtgaccaagagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaaatt |
201 |
Q |
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| T |
11183663 |
ttgtttcagagtgaccaagaattgttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctt |
11183564 |
T |
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| Q |
202 |
ttgttgcttcaatgataaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
277 |
Q |
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| T |
11183563 |
ttaaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
11183488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 11172893 - 11173090
Alignment:
| Q |
99 |
ggcttgtttcagagtgaccaagagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaa |
198 |
Q |
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| T |
11172893 |
ggcttgtttcagagtgaccaagtattgtcttccacaagtggcgcggacacgattgccattgtcaacagtttcaacaacaaccaaactcttttctttgaag |
11172992 |
T |
|
| Q |
199 |
attttgttgcttcaatgataaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaatgttgtgaatgggaattct |
296 |
Q |
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| T |
11172993 |
cttttaaggcctcgatgattaaaatgagtagaattaaagtgttaactggatctcaaggtgaaattagaaaacaatgtaactttgttaatggaaattct |
11173090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 11137647 - 11137740
Alignment:
| Q |
34 |
atttggacccaacgacacctgatacatttgactccaactactactccaatctccaagttggaaatggcttgtttcagagtgaccaagagctttt |
127 |
Q |
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| T |
11137647 |
attttgacccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagctttt |
11137740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 11190681 - 11190636
Alignment:
| Q |
314 |
agtcaccaaagaatcatcagaagatggaatggctagctcattctaa |
359 |
Q |
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| T |
11190681 |
agtcaccaaagattcatcagaagatggtattgttagctcattctaa |
11190636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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