View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_4 (Length: 459)
Name: NF9712_low_4
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 31223428 - 31223561
Alignment:
| Q |
45 |
ctaacaactaaaagataatgtattactttttaaggggaaagagtgtgttttatcaatataagagataaaatgtttgatgacttgttaaaacatcctatgt |
144 |
Q |
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| T |
31223428 |
ctaacaactaaaagataatgtattactttttaaggggaaagagtgtgttttatcaatataagggataaaatgtttgatgacttgttaaaacatcctatgt |
31223527 |
T |
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| Q |
145 |
ttattttagtacatgtaaatgtacacgtgtattc |
178 |
Q |
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| T |
31223528 |
ttattttagtacatgtaaatgtacacgtgtattc |
31223561 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 31223744 - 31223832
Alignment:
| Q |
359 |
caacctttcttatacttctgatttctcaggaccatttatttactatattttccccaaatcaagatacattgtatttgtcacctttgctt |
447 |
Q |
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| T |
31223744 |
caaccattcttatacttctgatttctcaggaccatttatttactatattttccccaaatcaagatacattgtatttgtcacctttgctt |
31223832 |
T |
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