View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_6 (Length: 456)
Name: NF9712_low_6
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 40 - 453
Target Start/End: Original strand, 34849901 - 34850313
Alignment:
| Q |
40 |
cattaattaatatcttaagataatcttccnnnnnnnnnntatatcttaagataaggaatatgatcttttttcttatatgaaaattctccgcgtaaaggaa |
139 |
Q |
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| T |
34849901 |
cattaattaatatcttaagataatcttccaaaaaaaaaa-atatcttaagataaggaatatgatcttttttcttatatgaaaattctccgcgtaaaggaa |
34849999 |
T |
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| Q |
140 |
ttgaacttaatttcggacattataaatagcagacattctttgcctttcctcttcatctttataacttttgcctgcaatatttggttagtgaatactcatc |
239 |
Q |
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| T |
34850000 |
ttgaacttaatttcggacattataaatagcagacactctttgcctttcctcttcatctttataacttttgcctgcaatatttggttagtgaatactcatc |
34850099 |
T |
|
| Q |
240 |
caatatttgacaagaaatcttgataatacatctttgaacatcctcttcagaaaagaaaaaagaaacatatctttaaacatggataacaacaaaaagcaag |
339 |
Q |
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| T |
34850100 |
caatatttgacaagaaatcttgataatacatctttaaacatcctcttcagaaaagaaaaaagaaacacatctttaaacatggataacaacaaaaagcaag |
34850199 |
T |
|
| Q |
340 |
catggtcttcttcttcttcatcaaccgtgaaatttgatcaacttttcggtcccaaggacccttcgtcggcatcatcttcctccttatttggctccatttt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34850200 |
catggtcttcttcttcttcatcaaccgtgaaatttgatcaacttttcggtcccaaggacccttcgtcggcgtcatcttcctccttatttggctccatttt |
34850299 |
T |
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| Q |
440 |
cccaccaccaccaa |
453 |
Q |
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| T |
34850300 |
cccaccaccaccaa |
34850313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 3653237 - 3653139
Alignment:
| Q |
303 |
aacatatctttaaacatggataacaacaaaaagcaagcatggtcttcttc---ttcttcatcaaccgtgaaatttgatcaacttttcggtcccaaggac |
398 |
Q |
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||||||||| | |||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| || ||||||||||| || |||||||| |
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| T |
3653237 |
aacatatctatgaacatggataacaacaaaaaccaaacatgttcttcttccaattcttcatcaaccgtgaatttcaatcaacttttcagttccaaggac |
3653139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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