View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9712_low_9 (Length: 428)

Name: NF9712_low_9
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9712_low_9
NF9712_low_9
[»] chr4 (7 HSPs)
chr4 (91-412)||(52725838-52726138)
chr4 (303-345)||(41633374-41633416)
chr4 (303-346)||(18375389-18375432)
chr4 (303-345)||(23348112-23348154)
chr4 (303-345)||(54358270-54358312)
chr4 (303-344)||(37674000-37674041)
chr4 (304-345)||(54021241-54021282)
[»] chr8 (7 HSPs)
chr8 (303-346)||(4824300-4824343)
chr8 (303-347)||(33889006-33889050)
chr8 (303-345)||(41322687-41322729)
chr8 (303-345)||(15561913-15561955)
chr8 (304-346)||(34392258-34392300)
chr8 (303-345)||(36473048-36473090)
chr8 (316-349)||(13357625-13357658)
[»] chr2 (9 HSPs)
chr2 (303-347)||(14940984-14941028)
chr2 (304-346)||(13686152-13686194)
chr2 (304-348)||(45093145-45093189)
chr2 (303-346)||(28429436-28429479)
chr2 (303-345)||(2752614-2752656)
chr2 (316-346)||(35676269-35676299)
chr2 (303-344)||(19899077-19899118)
chr2 (316-345)||(24413874-24413903)
chr2 (304-345)||(35323474-35323515)
[»] chr3 (6 HSPs)
chr3 (303-346)||(23642977-23643020)
chr3 (306-346)||(39145412-39145452)
chr3 (304-345)||(34624486-34624527)
chr3 (303-343)||(38176390-38176430)
chr3 (303-343)||(45166384-45166424)
chr3 (305-345)||(52546902-52546942)
[»] chr1 (7 HSPs)
chr1 (303-346)||(16255012-16255055)
chr1 (307-346)||(4624500-4624539)
chr1 (303-350)||(31032691-31032738)
chr1 (303-342)||(41647385-41647424)
chr1 (303-346)||(42480281-42480324)
chr1 (303-344)||(47550949-47550990)
chr1 (303-347)||(34476057-34476101)
[»] chr5 (2 HSPs)
chr5 (303-346)||(4391843-4391886)
chr5 (304-346)||(3456908-3456950)
[»] scaffold0339 (1 HSPs)
scaffold0339 (305-346)||(13402-13443)
[»] chr6 (1 HSPs)
chr6 (316-345)||(17366987-17367016)
[»] chr7 (1 HSPs)
chr7 (303-347)||(23991947-23991991)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 91 - 412
Target Start/End: Original strand, 52725838 - 52726138
Alignment:
Q  91 agagggtaaacgagaacaaggtagagattgttagttatagatttcattattgtctttttcaccaaaattcacttggagagacatggagaccactttacct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52725838 agagggtaaacgagaacaaggtagagattgttagttatagatttcattattgtctttttcaccaaaattcacttggagagaaatggagaccactttacct 52725937  T
Q  191 atgtctcaaattcattgaattcctcttgaacaaaataaagaagaagatatatgccaccttgaccagtagttttggcgtcaagcaattgatgttaaagaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||    
T  52725938 atgtctcaaattcattgaattcctcttgaacaaaataaagaagaagatatatgccaccttga--------------------caattgatgttaaagaaa 52726017  T
Q  291 catttattgtgagaaaaattcttactgctatttttctagagaaatagcattttcctattgagaatacagccacattttttatctatttcccttttatttc 390  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||    
T  52726018 cacttattgtgagaaaaattcttgatgctatttttctagagaaatagcattttcctattgtg-agacagccacattttctatctatttcccttttatttc 52726116  T
Q  391 tacaattctttatgtcattatt 412  Q
    ||||||||||||||||| ||||    
T  52726117 tacaattctttatgtcactatt 52726138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 41633374 - 41633416
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  41633374 gaaaaattcttgatgctatttttctagagaaatagcattttcc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 18375432 - 18375389
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  ||||||||||||||||||||| |||||||||    
T  18375432 gaaaaattcttgatgctatttttctagagaaataacattttcct 18375389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 23348154 - 23348112
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||| ||  ||||||||||||||||||||||||||||||    
T  23348154 gaaaaattattgatgctatttttctagagaaatagcattttcc 23348112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 54358270 - 54358312
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  ||||||||||||||||||||| ||||||||    
T  54358270 gaaaaattcttgatgctatttttctagagaaataacattttcc 54358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 37674041 - 37674000
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttc 344  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  37674041 gaaaaattcttgatgctatttttctagagaaatatcattttc 37674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 54021282 - 54021241
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    ||||||||||  ||||||||||||||||||||| ||||||||    
T  54021282 aaaaattcttgatgctatttttctagagaaataacattttcc 54021241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 4824300 - 4824343
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  4824300 gaaaaattcttaatgctatttttctagagaaatagcattttcct 4824343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 33889006 - 33889050
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttccta 347  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  33889006 gaaaaattcttgatgctatttttctagagaaatagcattttccta 33889050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 41322687 - 41322729
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  41322687 gaaaaattcttgatgctatttttctagagaaatagcattttcc 41322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 15561955 - 15561913
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  ||||||||||||||| ||||||||||||||    
T  15561955 gaaaaattcttgatgctatttttctagataaatagcattttcc 15561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 34392258 - 34392300
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    ||||||||||| | |||||||| ||||||||||||||||||||    
T  34392258 aaaaattcttaattctatttttttagagaaatagcattttcct 34392300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 36473090 - 36473048
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  36473090 gaaaaattcttgatgttatttttctagagaaatagcattttcc 36473048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 13357658 - 13357625
Alignment:
Q  316 tgctatttttctagagaaatagcattttcctatt 349  Q
    ||||||||||||||| ||||||||||||||||||    
T  13357658 tgctatttttctagataaatagcattttcctatt 13357625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 14941028 - 14940984
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttccta 347  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  14941028 gaaaaattcttgatgctatttttctagagaaatagcattttccta 14940984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 13686152 - 13686194
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  13686152 aaaaattcttgatgctatttttctagagaaatagcattttcct 13686194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 45093189 - 45093145
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcctat 348  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||    
T  45093189 aaaaattcttgatgctatttttctagagaaataacattttcctat 45093145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 28429436 - 28429479
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  28429436 gaaaaattcttgatgctatttttctaaagaaatagcattttcct 28429479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 2752656 - 2752614
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  2752656 gaaaaattcttgatgctatttttctagagaaatagcaatttcc 2752614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 35676299 - 35676269
Alignment:
Q  316 tgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||||||||||||||||||||||    
T  35676299 tgctatttttctagagaaatagcattttcct 35676269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 19899077 - 19899118
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttc 344  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  19899077 gaaaaattcgtgatgctatttttctagagaaatagcattttc 19899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 24413874 - 24413903
Alignment:
Q  316 tgctatttttctagagaaatagcattttcc 345  Q
    ||||||||||||||||||||||||||||||    
T  24413874 tgctatttttctagagaaatagcattttcc 24413903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 35323515 - 35323474
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  35323515 aaaaattcttaatactatttttctagagaaataacattttcc 35323474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 23643020 - 23642977
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  23643020 gaaaaattcttgatgctatttttctagagaaatagcattttcct 23642977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 39145412 - 39145452
Alignment:
Q  306 aaattcttactgctatttttctagagaaatagcattttcct 346  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  39145412 aaattcttgatgctatttttctagagaaatagcattttcct 39145452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 34624527 - 34624486
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    ||||||||||  ||||||||||||||||||||| ||||||||    
T  34624527 aaaaattcttgatgctatttttctagagaaataacattttcc 34624486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 38176430 - 38176390
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcatttt 343  Q
    |||||||||||| ||||||||||||| ||||||| ||||||    
T  38176430 gaaaaattcttaatgctatttttctaaagaaatatcatttt 38176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 45166384 - 45166424
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcatttt 343  Q
    |||||||||||  ||||||||||||||||||||| ||||||    
T  45166384 gaaaaattcttgatgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 52546902 - 52546942
Alignment:
Q  305 aaaattcttactgctatttttctagagaaatagcattttcc 345  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  52546902 aaaattcttgatgcaatttttctagagaaatagcattttcc 52546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 16255012 - 16255055
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  16255012 gaaaaattcttgatgctatttttctagagaaatagcattttcct 16255055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 4624500 - 4624539
Alignment:
Q  307 aattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  4624500 aattcttgatgctatttttctagagaaatagcattttcct 4624539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 31032738 - 31032691
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcctattg 350  Q
    |||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  31032738 gaaaaattcttgatgctatttttctagaaaaataacattttcctattg 31032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 41647385 - 41647424
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattt 342  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  41647385 gaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 42480281 - 42480324
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  ||||||||||||||||||||| |||||||||    
T  42480281 gaaaaattcttgatgctatttttctagagaaataacattttcct 42480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 47550949 - 47550990
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttc 344  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  47550949 gaaaaattcttgatgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 34476057 - 34476101
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttccta 347  Q
    |||||||||||  | ||||||||||||||||||||| ||||||||    
T  34476057 gaaaaattcttgatactatttttctagagaaatagccttttccta 34476101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 4391886 - 4391843
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||||  |||||||||||||||||||| ||||||||||    
T  4391886 gaaaaattcttgatgctatttttctagagaaattgcattttcct 4391843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 3456908 - 3456950
Alignment:
Q  304 aaaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    ||||||||||  ||||||||||||||| |||||||||||||||    
T  3456908 aaaaattcttgatgctatttttctagaaaaatagcattttcct 3456950  T

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Target: scaffold0339 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 13402 - 13443
Alignment:
Q  305 aaaattcttactgctatttttctagagaaatagcattttcct 346  Q
    |||||||||  ||||||||||||||||||||| |||||||||    
T  13402 aaaattcttgatgctatttttctagagaaatatcattttcct 13443  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 17366987 - 17367016
Alignment:
Q  316 tgctatttttctagagaaatagcattttcc 345  Q
    ||||||||||||||||||||||||||||||    
T  17366987 tgctatttttctagagaaatagcattttcc 17367016  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 23991991 - 23991947
Alignment:
Q  303 gaaaaattcttactgctatttttctagagaaatagcattttccta 347  Q
    |||||||||||  | |||| |||||||||||||||||||||||||    
T  23991991 gaaaaattcttgatactatgtttctagagaaatagcattttccta 23991947  T

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