View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9713_high_3 (Length: 261)
Name: NF9713_high_3
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9713_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 47052359 - 47052124
Alignment:
| Q |
20 |
ttgcaagaccaccaatctctccgtcctgcaatgaagaatgtaatcttgatgttggaaggtttgaaagatattccggttcctccctctccagctcgcttgc |
119 |
Q |
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| T |
47052359 |
ttgcaagaccaccaatctctccgtcctgcaatgaagaatgtaatcttgatgttggaaggtttgaaagatattccggttcctccctctccagctcgcttgc |
47052260 |
T |
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| Q |
120 |
ttgagtagtcttgtagggatttatgtgttgcttgtgtgatttattatttgtgctattgcagtttcaagttt-tgttgaatttactgttcaggttgtgttg |
218 |
Q |
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| T |
47052259 |
ttgagtagtcttgtagggatttatgtgttgcttgtgtgatttattatttgtgctattgcagtttcaagtttatgttgaatttactgttcaggttgtgttg |
47052160 |
T |
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| Q |
219 |
tgatgaactatatatcaaaagctagcatctgtgctc |
254 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
47052159 |
tgatgaactatatatcaaaagctagcatttgtgctc |
47052124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 47079533 - 47079384
Alignment:
| Q |
21 |
tgcaagaccaccaatctctccgtcctgcaatgaagaatgtaatcttgatgttggaaggtttgaaagatattccggttcctccctctccagctcgcttgct |
120 |
Q |
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| T |
47079533 |
tgcaagaccaccaatctctccgtcctgcaatgaagaatgtaatcttgatgttggaaggtttgaaagatattccagttcctccctctgcagctcgcttgct |
47079434 |
T |
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| Q |
121 |
tgagtagtcttgtagggat--ttatgtgttgcttgtgtgatttattattt |
168 |
Q |
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| T |
47079433 |
tgagtagtcttgtagggattgttatatgttgcttttgtgaatttttattt |
47079384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 47062243 - 47062344
Alignment:
| Q |
37 |
tctccgtcctgcaatgaagaatgtaatcttgatgttggaaggtttgaaagatattccggttcctccctctccagctcgcttgcttgagtagtcttgtagg |
136 |
Q |
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|||||||||| |||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
47062243 |
tctccgtcctacaatgaagaatgtaattttaatgttggaaggtttggaagatattccagttcctccctcaccagctcgcttgcttgaatagtcttgtagg |
47062342 |
T |
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| Q |
137 |
ga |
138 |
Q |
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|| |
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| T |
47062343 |
ga |
47062344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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