View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9713_low_10 (Length: 242)

Name: NF9713_low_10
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9713_low_10
NF9713_low_10
[»] chr4 (6 HSPs)
chr4 (12-242)||(35677050-35677280)
chr4 (12-169)||(35649043-35649200)
chr4 (14-242)||(35641634-35641862)
chr4 (26-124)||(35656103-35656201)
chr4 (55-158)||(35646647-35646750)
chr4 (185-240)||(35655984-35656039)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 35677280 - 35677050
Alignment:
Q  12 catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677280 catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat 35677181  T
Q  112 gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677180 gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccacc 35677081  T
Q  212 ctgcatgttatatcattagtaactgtagaac 242  Q
    |||||||||||||||||||||||||||||||    
T  35677080 ctgcatgttatatcattagtaactgtagaac 35677050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 35649200 - 35649043
Alignment:
Q  12 catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35649200 catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat 35649101  T
Q  112 gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35649100 gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga 35649043  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 35641862 - 35641634
Alignment:
Q  14 tcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgt 113  Q
    ||||||||||| ||||||||| |||||| |||||| || |||||||||||||| ||||| ||||||||||||||||||||||| |||||  ||||||| |    
T  35641862 tcaataactttctcaaaaaattcatccaaatgtttagccactttttctgccttgctatagaaaccattaaccttacccaaccatttaagccaaggtatat 35641763  T
Q  114 aatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccaccct 213  Q
    ||||||||||||||||   | | || |||||||||||||||||||| |||||||| |  || |||||||  ||||  |||||||| |||||| |||||||    
T  35641762 aatctcctataaagaatgaacccaacaactctccaaactccaacatcagctccggcaataccccacctttttcaccatatctttttcctagagccaccct 35641663  T
Q  214 gcatgttatatcattagtaactgtagaac 242  Q
     ||||||||||||||||||| ||||||||    
T  35641662 acatgttatatcattagtaattgtagaac 35641634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 35656201 - 35656103
Alignment:
Q  26 tcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctata 124  Q
    ||||||||| ||||||  |||||||| ||||||||||| || ||||||||||||||||| || |||||||||| |||  ||||||| || |||||||||    
T  35656201 tcaaaaaattcatccaattgtttggccactttttctgctttgctataaaaaccattaacttttcccaaccaatcaagccaaggtatatagtctcctata 35656103  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 35646750 - 35646647
Alignment:
Q  55 tttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactcc 154  Q
    |||||||||||| | ||||| |||||| || || |||||||||| |||  | ||||| |||||||||||| | | | || ||||||||||||||||||||    
T  35646750 tttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactcc 35646651  T
Q  155 aaca 158  Q
    ||||    
T  35646650 aaca 35646647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 35656039 - 35655984
Alignment:
Q  185 tcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtaga 240  Q
    |||||||||||||| || ||| |||||||||||  |||||||||||||| ||||||    
T  35656039 tcacggtatctttttcccagagccaccctgcatactatatcattagtaattgtaga 35655984  T

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