View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9713_low_11 (Length: 239)
Name: NF9713_low_11
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9713_low_11 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 43998628 - 43998852
Alignment:
| Q |
1 |
agcacagcaacattgtccctgaaaagcatccagcttaaggcataagcttctactccacatttccgtcttgttttagaaagtagtggaaaaggattgcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43998628 |
agcacagcaacattgtccctgaaaagcatccagcttaaggcataagcttctactccacatttccgtcttgttttagaaagtagtggaaaaggattgcaca |
43998727 |
T |
|
| Q |
101 |
aacctgattaaagaaaagagcaaagtgagcaatttcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
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| T |
43998728 |
aacctgattaaagaaaagagcaaagtgagcaatttcaacaaccttgtcaatatcagcttcctcaaagacaatgaaaggcgatttccctccaagttctaat |
43998827 |
T |
|
| Q |
201 |
gtcactggcttaagattgcttcttg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
43998828 |
gtcactggcttaagattgcttcttg |
43998852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 18194984 - 18195109
Alignment:
| Q |
100 |
aaacctgattaaagaaaagagcaaagtgagcaatttcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaa |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
18194984 |
aaacctgattaaagcaaagagcaaagtgagcaatttcaacaaccttgtcaatatcagcttcctcaaagacaatgaaaggcgatttccctccaagttctaa |
18195083 |
T |
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| Q |
200 |
tgtcactggcttaagattgcttcttg |
225 |
Q |
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||||| ||||||||||||||||||| |
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| T |
18195084 |
tgtcatcggcttaagattgcttcttg |
18195109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 286062 - 285937
Alignment:
| Q |
100 |
aaacctgattaaagaaaagagcaaagtgagcaatttcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaa |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
286062 |
aaacctgattaaagcaaagagcaaagtgagcaatttcaacaaccttgtcaatatcagcttcctcaaagacaatgaaaggcgatttccctccaagttctaa |
285963 |
T |
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| Q |
200 |
tgtcactggcttaagattgcttcttg |
225 |
Q |
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||||| ||||||||||||||||||| |
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| T |
285962 |
tgtcatcggcttaagattgcttcttg |
285937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 292418 - 292293
Alignment:
| Q |
100 |
aaacctgattaaagaaaagagcaaagtgagcaatttcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaa |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
292418 |
aaacctgattaaagcaaagagcaaagtgagcaatttcaacaaccttgtcaatatcagcttcctcaaagacaatgaaaggcgatttccctccaagttctaa |
292319 |
T |
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| Q |
200 |
tgtcactggcttaagattgcttcttg |
225 |
Q |
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||||| ||||||||||||||||||| |
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| T |
292318 |
tgtcatcggcttaagattgcttcttg |
292293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 35211009 - 35211129
Alignment:
| Q |
101 |
aacctgattaaagaaaagagcaaagtgagcaatttcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaat |
200 |
Q |
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||||||||||||||| | |||||| || |||| ||||||||| ||||||| ||||||||||||||| || || || || ||||| |||||||| |||||| |
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| T |
35211009 |
aacctgattaaagaacaaagcaaaatgtgcaagttcaacagccttgtcaacatcagcatcctcacacactataaatggtgattttcctccaagctctaat |
35211108 |
T |
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| Q |
201 |
gtcactggcttaagattgctt |
221 |
Q |
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|| |||||||| ||||||||| |
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| T |
35211109 |
gtaactggcttgagattgctt |
35211129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 26895851 - 26895765
Alignment:
| Q |
135 |
tcaacagctttgtcaatatcagcatcctcacaaacaatgaaaggcgatttccctccaagttctaatgtcactggcttaagattgctt |
221 |
Q |
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|||||||||| || ||||||||||| || || ||||| || || |||||||||||||| || || || || ||||||||||||||| |
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| T |
26895851 |
tcaacagcttcatctatatcagcatcttcgcagacaataaacggagatttccctccaagctccaaagttaccggcttaagattgctt |
26895765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6650254 - 6650290
Alignment:
| Q |
181 |
atttccctccaagttctaatgtcactggcttaagatt |
217 |
Q |
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| T |
6650254 |
atttccctccaagttctaatgttattggcttaagatt |
6650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6730620 - 6730656
Alignment:
| Q |
181 |
atttccctccaagttctaatgtcactggcttaagatt |
217 |
Q |
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|||||||||||||||||||||| | |||||||||||| |
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| T |
6730620 |
atttccctccaagttctaatgttattggcttaagatt |
6730656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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