View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9713_low_12 (Length: 214)
Name: NF9713_low_12
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9713_low_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35676727 - 35676940
Alignment:
| Q |
1 |
ccctttaatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagtaatgaaaactcatgactcggtcttcgct |
100 |
Q |
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| T |
35676727 |
ccctttaatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagtaatgaaaactcatgactcggtcttcgct |
35676826 |
T |
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| Q |
101 |
gataggccacatcgtaaaatctttgatatccttttctacagttccaacgatgtggcaagttgtggatatggtgagtattggaaacaagtaagaagtctca |
200 |
Q |
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| T |
35676827 |
gataggccacatcgtaaaatctttgatatccttttctacggttccaaagatgtggcaagttgtggatatggtgagtattggaaacaagtaagaagtctca |
35676926 |
T |
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| Q |
201 |
gtgtattaaacctt |
214 |
Q |
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| T |
35676927 |
gtgtattaaacctt |
35676940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35655647 - 35655860
Alignment:
| Q |
1 |
ccctttaatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagtaatgaaaactcatgactcggtcttcgct |
100 |
Q |
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|||||||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
35655647 |
ccctttaatgcttctttattttgggaaggttccagtacttgtagtttcctcagctgatgcagcaagaaaagtaatgaaaactcatgacttagtcttctgt |
35655746 |
T |
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| Q |
101 |
gataggccacatcgtaaaatctttgatatccttttctacagttccaacgatgtggcaagttgtggatatggtgagtattggaaacaagtaagaagtctca |
200 |
Q |
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| T |
35655747 |
gataggccacaacttaaaatctttgatatccttttattcagttccaaagatgtggcaagttgtgcatatggtgagtattggagacaagtaaggagtctca |
35655846 |
T |
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| Q |
201 |
gtgtattaaacctt |
214 |
Q |
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| T |
35655847 |
gtgtgttacacctt |
35655860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 35641316 - 35641524
Alignment:
| Q |
6 |
taatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagtaatgaaaactcatgactcggtcttcgctgatag |
105 |
Q |
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| T |
35641316 |
taatgcttctttatttagggaaggtaccagtggttgtagtttcctcagctgatgcagcaagtcaggtaatgaaaactcatgacttgatcttctctgatag |
35641415 |
T |
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| Q |
106 |
gccacatcgtaaaatctttgatatccttttctacagttccaacgatgtggcaagttgtggatatggtgagtattggaaacaagtaagaagtctcagtgta |
205 |
Q |
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| T |
35641416 |
gccacaacgtaaaatctttgatatcatgttgtatggttccaaaggtgtagcaagttgtgcatatggtgagtattggagacaagtaaggagtcttagtgtg |
35641515 |
T |
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| Q |
206 |
ttaaacctt |
214 |
Q |
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||| ||||| |
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| T |
35641516 |
ttacacctt |
35641524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 35646231 - 35646412
Alignment:
| Q |
1 |
ccctttaatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagtaatgaaaactcatgactcggtcttcgct |
100 |
Q |
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|||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| |||||||| ||||||||||||||||||| | ||| ||| || |
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| T |
35646231 |
ccctttaatgcttctttattttgggaaggttccagtacttgtaatttcctctgctgatacagcaagaaaagtaatgaaaactcatgatttggttttctct |
35646330 |
T |
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| Q |
101 |
gataggccacatcgtaaaatctttgatatccttttctacagttccaacgatgtggcaagttgtggatatggtgagtattgga |
182 |
Q |
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| T |
35646331 |
gatagaccatatcgtaaaatgaatgacatacttttatatggttccaaagatatggctagttgtggatatggtgaatattgga |
35646412 |
T |
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