View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9713_low_2 (Length: 438)
Name: NF9713_low_2
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9713_low_2 |
 | |
|
| [»] scaffold1034 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold1034 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold1034
Description:
Target: scaffold1034; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 234 - 418
Target Start/End: Complemental strand, 2484 - 2300
Alignment:
| Q |
234 |
ttattcacataatttaaaataagaaaataaaaaacatggacctctcattcaagatattttgtcatgcgtttacaaaccaaccct-tcatttgttttcatt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2484 |
ttattcacataatttaaaataagaaaataaaaaacatggacctctcattcaagatattttgtcatgcgtttacaaaccaaccccctcatttgttttcatt |
2385 |
T |
|
| Q |
333 |
tgatttgaccgctcagttaactcaaaggacaaatttggtataaagtcacattcatcataacatacactgaaacattttatccattt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2384 |
tgatttgaccgctcagttaactcaaaggacaaatttggtataaagtcacattcatcataacatacactgaaaca-tttatccattt |
2300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1034; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2705 - 2663
Alignment:
| Q |
3 |
caaagtaaaacccaatttaaaaattagttaatagttatataat |
45 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2705 |
caaagtgaaacccaatttaaagattagttaatagttatataat |
2663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University