View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9713_low_3 (Length: 421)
Name: NF9713_low_3
Description: NF9713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9713_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 37588171 - 37587874
Alignment:
| Q |
1 |
gaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaatgaagttaggtttctagcaaaagagt-gagtcaaaaaatactagtattcca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
37588171 |
gaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaatgaagttaggtttctagcaaaagattagagtcaaaaaatactagtattcca |
37588072 |
T |
|
| Q |
100 |
aatttggccgaagagaaggaaaatcgttcaaaaagtattagttagtcataaaacaaggggagtagagttttctaactcaaaatcagtatacggatatcgc |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37588071 |
gatttggccgaaaagaaggaaaatcgttcaaaaagtattagttagtcataaaacaagcggagtagagttttctaactcaaaatcagtatatggatatcgc |
37587972 |
T |
|
| Q |
200 |
tagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaagttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37587971 |
tagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaagttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt |
37587874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 37587873 - 37587800
Alignment:
| Q |
326 |
ccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcct |
399 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37587873 |
ccaaagaagagtttcctttcattgtcacgaggatgaaaatgaggcggagcagttatttttataaatgatggcct |
37587800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 27006110 - 27006015
Alignment:
| Q |
307 |
ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggccttga |
402 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| || ||| || ||| ||| |||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
27006110 |
ctagcaaacaagacatcgcccagagaggagtttcctatcacagtcacggggacgaaaatgaggcggagctgtaatttttctcagtgatggccttga |
27006015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 37583254 - 37583191
Alignment:
| Q |
82 |
aaaaatactagtattccaaatttggccgaagagaaggaaaatcgttcaaaaagtattagttagt |
145 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| ||||| ||||||||| |||| |
|
|
| T |
37583254 |
aaaaatactagtattccaaatttggcagacaagaaggaaaatctttcaataagtattagctagt |
37583191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 36811365 - 36811270
Alignment:
| Q |
307 |
ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggccttga |
402 |
Q |
| |
|
||||||||||||||||| || ||||| | |||| || ||||||| ||| ||| | |||||||| ||||| | || |||| | |||||||||||||| |
|
|
| T |
36811365 |
ctagcaaacaagacatctcctaaagaggggtttcctatcattgtcacggggacggaaatgaggtggagccgctacttttttcaatgatggccttga |
36811270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University