View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9714_4 (Length: 474)
Name: NF9714_4
Description: NF9714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9714_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 43030549 - 43031007
Alignment:
| Q |
14 |
tacttatcggcctaactttggattatcaaagcccttctcccccaataagaggagggctgagacaaaaatctcattagaaaaagatgaagatatggtagaa |
113 |
Q |
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| T |
43030549 |
tacttatcggcctaactttggattatcaaagcccttctcccccaataagaggagggccgagacaaaaatctcattagaaaaagatgaagatatggtagaa |
43030648 |
T |
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| Q |
114 |
ttctcaccaacatcatgtggcaatcccatctgagtaggccttatactttgcaagaaaccgcaccatgattccaagccaccactcagcttatgtggtttat |
213 |
Q |
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| T |
43030649 |
ttctcaccaacatcatgtgacaatcccatctgagtaggccttatactttgcaagaaaccgcaccatgattccaagccaccactcagcttatgtggtttat |
43030748 |
T |
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| Q |
214 |
ttaaatccggagaatagtgtaagctcccaaatgatgcatagataaagatgcaaattaaggtgtaagaaacaataatatgatatgttaaaatttgaaagac |
313 |
Q |
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| T |
43030749 |
ttaaatccggagaatagtgtaagctcccaaatgatgcatagataaagatgcaaattaaggtgtaagaaacaataatatgatatgataaaatttgaaagac |
43030848 |
T |
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| Q |
314 |
caagcagaaattcacctatgagatgcaagctctttcaatacaatgtcaatggcattgatagcttcttggggagtttccacnnnnnnnccattgagaagct |
413 |
Q |
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| T |
43030849 |
caggcagaaattcacctatgagatgcaagctctttcaataaaatgtcaatggcattgatagcttcttggggagtttccactttttttccactgagaagct |
43030948 |
T |
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| Q |
414 |
catgtaactgatccatgcnnnnnnnnctcgattgcaacttcaaattctctttcccctaaaa |
474 |
Q |
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| T |
43030949 |
--tgtaactgatccatgcaaaaaaaactcgattgcaacttcaaattctctttcccctaaaa |
43031007 |
T |
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Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 85 - 425
Target Start/End: Complemental strand, 46527788 - 46527448
Alignment:
| Q |
85 |
cattagaaaaagatgaagatatggtagaattctcaccaacatcatgtggcaatcccatctgagtaggccttatactttgcaagaaaccgcaccatgattc |
184 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
46527788 |
cattaaaaaaatatgaagatatggtagaagtctcaccaacattaagcgataatcccatctgagtaggccttatactttgatagaaaccgctccatgattc |
46527689 |
T |
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| Q |
185 |
caagccaccactcagcttatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcatagataaagatgcaaattaaggtgtaagaaaca |
284 |
Q |
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| T |
46527688 |
caagccaccactcagcttatgtggtttttttaaatccggagaatagtgtaagctcccaaatgatacatagctaaatatacaaattaaggtgtcagaaaca |
46527589 |
T |
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| Q |
285 |
ataatatgatatgttaaaatttgaaagaccaagcagaaattcacctatgagatgcaagctctttcaatacaatgtcaatggcattgatagcttcttgggg |
384 |
Q |
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|||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
46527588 |
ataacatgatatgttaaaacttgaaagacaaagctcaaattcacctatgagatgcaagctccttcaatacaatgtcaatggcattgatagcttcttgtgg |
46527489 |
T |
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| Q |
385 |
agtttccacnnnnnnnccattgagaagctcatgtaactgat |
425 |
Q |
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| T |
46527488 |
agtttccactttttttccactgagaagctcatgtaactgat |
46527448 |
T |
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