View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9714_6 (Length: 331)
Name: NF9714_6
Description: NF9714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9714_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 37957623 - 37957303
Alignment:
| Q |
11 |
cagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgct |
110 |
Q |
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| T |
37957623 |
cagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgct |
37957524 |
T |
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| Q |
111 |
tttaaacaaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaat |
210 |
Q |
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| T |
37957523 |
tttaaacaaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaat |
37957424 |
T |
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| Q |
211 |
ttcttcagggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatga |
310 |
Q |
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| T |
37957423 |
ttcttcagggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgttcaagttgagttatga |
37957324 |
T |
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| Q |
311 |
tggacttgacaacgagcaaaa |
331 |
Q |
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| T |
37957323 |
tggacttgacaacgagcaaaa |
37957303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 37929961 - 37930269
Alignment:
| Q |
12 |
agagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgctt |
111 |
Q |
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| T |
37929961 |
agagacaagcaagtgcttgagaatgccaatgccgatgaaatatatgaagttagggagatggattttcaagattctctacaactcttctgtttaagtgctt |
37930060 |
T |
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| Q |
112 |
ttaaacaaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatt |
211 |
Q |
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| T |
37930061 |
ttaaacaaaactatccaatataaacttatgtgagcttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttttgggattatt |
37930160 |
T |
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| Q |
212 |
tcttcagggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgat |
311 |
Q |
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| T |
37930161 |
gcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgat |
37930260 |
T |
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| Q |
312 |
ggacttgac |
320 |
Q |
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| T |
37930261 |
gaacttgac |
37930269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 19869274 - 19869328
Alignment:
| Q |
40 |
atgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaact |
94 |
Q |
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| T |
19869274 |
atgctgatgaaatatatgaagtgaatgagatgaattttcaagattctctacaact |
19869328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 25721541 - 25721671
Alignment:
| Q |
12 |
agagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgctt |
111 |
Q |
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|||||||| || ||||| ||||||| || | | ||||||||||| |||| || |||||| ||| ||||||||| || |||||||| ||| | ||| | |
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| T |
25721541 |
agagacaaacatgtgcttaagaatgccatttcagatgaaatatacgaagtcaaggagatgtgttttcaagattcagtacaactcttcagtttaaatgcct |
25721640 |
T |
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| Q |
112 |
ttaaacaaaaccatccaatagaaccttatgt |
142 |
Q |
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| T |
25721641 |
ttaaacaaaactatcctataaaagcttatgt |
25721671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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