View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9714_low_3 (Length: 238)
Name: NF9714_low_3
Description: NF9714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9714_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 7502533 - 7502746
Alignment:
| Q |
13 |
cagagacgctagtgacgtgatggacggagatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatgga |
112 |
Q |
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| T |
7502533 |
cagagacgctagtgacgtgatggacggagatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatgga |
7502632 |
T |
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| Q |
113 |
aagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatg |
212 |
Q |
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| T |
7502633 |
aagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatg |
7502732 |
T |
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| Q |
213 |
ttccaccaaactga |
226 |
Q |
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| T |
7502733 |
ttccaccaaactga |
7502746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 7499231 - 7499412
Alignment:
| Q |
45 |
cctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagag |
144 |
Q |
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| T |
7499231 |
cctgtggaggaaataccgtttagaatttcactggagatgagattggtgtctccataagccgtaatggaaatttcgccatgaagtttggctttcaacagga |
7499330 |
T |
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| Q |
145 |
ctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatgttccaccaaactga |
226 |
Q |
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| T |
7499331 |
ctaagggaatgttgttagaaatgttggtaacgctctcgaggtttgttggaactttacagtcatcaatgttccaccaaactga |
7499412 |
T |
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