View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9714_low_4 (Length: 228)
Name: NF9714_low_4
Description: NF9714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9714_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37835726 - 37835947
Alignment:
| Q |
1 |
cgggcatagtagcactgtaatacttccacaccttcatcctgaaaacattacacctcattcgacgcaaaagtatatataacgtnnnnnnnnnnnngatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
37835726 |
cgggcatagtagcactgtaatacttccacaccttcatcctgaaaacattacacctcattcgacgcaaaagtatatataatgtaaaaataaaaaagatctc |
37835825 |
T |
|
| Q |
101 |
ccattacagtttaatttccaaaacagaatttgtcaataaaattaagtttgtaacaatacataccatgagctttccatggctttcctggagagtttttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835826 |
ccattacagtttaatttccaaaacagaatttgtcaataaaattaagtttgtaacaatacataccatgagctttccatggctttcctggagagtttttcca |
37835925 |
T |
|
| Q |
201 |
tctttattcttcctccagttat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
37835926 |
tctttattcttcctccagttat |
37835947 |
T |
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