View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9715_high_2 (Length: 322)
Name: NF9715_high_2
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 29000686 - 29000383
Alignment:
| Q |
1 |
agacatggtaaaagtagaaagcatgaagagactccattagatgattcttcctcgtgctaatatgattttgattcatccatcatattaccaataacctttt |
100 |
Q |
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| T |
29000686 |
agacatggtaaaagtagaaagcatgaagagactccattagatgattcttcctcgtgctaatatgattttgattcatccatcatattaccaataacctttt |
29000587 |
T |
|
| Q |
101 |
tatatgttgcatggatatcattgattcatgcataacccgaatgcaccatgttataaccaacctcatatgaattacaatggctcgtaaacaagtttttcat |
200 |
Q |
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| T |
29000586 |
tatatgttgcatggatatcattgattcatgcataacccgaatgcaccatgttataaccaacctcatatgaattacaatggctcgtaaacaagtttttcat |
29000487 |
T |
|
| Q |
201 |
atgactaacaacaaattgaaccaccaataataagctctaggttatttgattatgtatttataggaagtggaaataaaagttataaatgtgataactgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29000486 |
atgactaacaacaaattgaaccaccaataataagctctaggttatttgattatgtatttataggaagtggaaataaaagttataaatgtgataactgaag |
29000387 |
T |
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| Q |
301 |
ttat |
304 |
Q |
| |
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|||| |
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| T |
29000386 |
ttat |
29000383 |
T |
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