View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9715_high_5 (Length: 240)
Name: NF9715_high_5
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 20374359 - 20374138
Alignment:
| Q |
17 |
agaaagagtcaataaaccttggttcaacaacatgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20374359 |
agaaagagtcaataaaccttggttcaacaacatgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttacttgtttg |
20374260 |
T |
|
| Q |
117 |
gattagatttctttctattataattaactcatgattactttaatttgattgtactgttgaatgattatatatttgctattgaatctgttttgctattgct |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20374259 |
gattagatttccttctattataattaactcatgattactttaatttgattgtactgttgaatgattatatatttgctattgaatctgttttgctattgct |
20374160 |
T |
|
| Q |
217 |
attgggggtgatattgtcgtca |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20374159 |
attgggggtgatattgtcgtca |
20374138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 20352309 - 20352418
Alignment:
| Q |
17 |
agaaagagtcaataaaccttggttcaacaacatgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
20352309 |
agaaagagtcaataaaacttggttcaaaaacatgaattatgttgaaagtttggtttcttatcgttgaaagtaagtttctctacaacaatttactcatttg |
20352408 |
T |
|
| Q |
117 |
gattagattt |
126 |
Q |
| |
|
|||||||||| |
|
|
| T |
20352409 |
gattagattt |
20352418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 20133142 - 20133081
Alignment:
| Q |
47 |
catgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaattta |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||| |
|
|
| T |
20133142 |
catgaattatgttgaaagtttggtttcatattgttgaaagtaagtttctctacaaaaattta |
20133081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 20339139 - 20339237
Alignment:
| Q |
18 |
gaaagagtcaataaaccttggttcaacaacatgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
|||||| |||| ||||||||||| || || |||||||| ||||||||||| | || || |||| |||||||||||| | ||||||||||| ||||| |
|
|
| T |
20339139 |
gaaagaatcaacaaaccttggtttaatggcaaaaattatgtcgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaatttactagtttg |
20339237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 22064354 - 22064418
Alignment:
| Q |
52 |
attatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
|||||| |||||| |||||||||||| |||| ||||||||||| ||| || ||||||| ||||| |
|
|
| T |
22064354 |
attatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttg |
22064418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 22081120 - 22081184
Alignment:
| Q |
52 |
attatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
||||||||||||||||| |||| ||| |||| |||||||| || |||||| ||||||| ||||| |
|
|
| T |
22081120 |
attatgttgaaagtttgatttcttatgtttgaaagtaagttcctttacaacgatttacttgtttg |
22081184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 11981490 - 11981431
Alignment:
| Q |
57 |
gttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11981490 |
gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttg |
11981431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 11970792 - 11970730
Alignment:
| Q |
54 |
tatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
||||||||||| ||||||| |||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
11970792 |
tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttg |
11970730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 15961485 - 15961538
Alignment:
| Q |
57 |
gttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttact |
110 |
Q |
| |
|
|||||||| |||||||| ||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
15961485 |
gttgaaagcttggtttcatattgttgaaagtaagtttctctacaacgatttact |
15961538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 5436636 - 5436572
Alignment:
| Q |
52 |
attatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttactcgtttg |
116 |
Q |
| |
|
||||||||||||| ||||||| ||||| || | |||||||| |||| |||||| ||||| ||||| |
|
|
| T |
5436636 |
attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaagttacttgtttg |
5436572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University