View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9715_high_6 (Length: 223)
Name: NF9715_high_6
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 32919306 - 32919108
Alignment:
| Q |
15 |
aatttgttctattcagcgggtgactcgttcatgaatgtgagagtggactgctaccacaaacaatacatcaccaaaaccataaaatttgtgtaaaatttgc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32919306 |
aatttgttctattcagcgggtgactcgttcatgaatgtgagagtggactgctaccacaaacaatacatcacgaaaaccataaaatttgtgtaaaatttgc |
32919207 |
T |
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| Q |
115 |
atgacagcaaaacttcattgggtgcgtagatatagttttttatccatcgacattagcactgtattcgtccacaaactggtaaacatcctttcccctttg |
213 |
Q |
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|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32919206 |
atgacagcaaaacttctttgggtgcgtagatatagggttgtatccatcgacattagcactgtattcgtccacaaactggtaaacatcctttcccttttg |
32919108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 39599522 - 39599696
Alignment:
| Q |
15 |
aatttgttctattcagcgggtgactcgttcatgaatgtgagagtggactgctaccacaaacaatacatcaccaaaaccataaaatttgtgtaaaatttgc |
114 |
Q |
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|||||||||||| || | |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
39599522 |
aatttgttctatccatctggtgcctcgttcgtgaatgtgagagtggactgctac-acaaacaatacatcaccaaaaccgtagaatttccgtaaaatttgc |
39599620 |
T |
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| Q |
115 |
atgacagcaaaacttcattgggtgcgtagatatagttttttatccatcgacattagcactgtattcgtccacaaac |
190 |
Q |
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|||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |
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| T |
39599621 |
atgacagcaaaacttctttgggtgcgtagatatagggctgtatccatcggcattagcactgtattcgtccacaaac |
39599696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 29314303 - 29314356
Alignment:
| Q |
155 |
tatccatcgacattagcactgtattcgtccacaaactggtaaacatcctttccc |
208 |
Q |
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|||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
29314303 |
tatccatcaacattagcaccgtatttgtccacaaactggtaaacaccctttccc |
29314356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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