View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9715_low_11 (Length: 202)

Name: NF9715_low_11
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9715_low_11
NF9715_low_11
[»] chr8 (2 HSPs)
chr8 (1-187)||(27227989-27228175)
chr8 (5-187)||(27223798-27223980)
[»] chr1 (9 HSPs)
chr1 (32-145)||(48639761-48639874)
chr1 (41-116)||(48661442-48661517)
chr1 (27-161)||(48666992-48667126)
chr1 (32-116)||(48585217-48585301)
chr1 (1-182)||(11547058-11547239)
chr1 (1-161)||(48618327-48618487)
chr1 (37-144)||(48628731-48628838)
chr1 (8-143)||(48652986-48653121)
chr1 (31-143)||(48656434-48656546)
[»] chr3 (1 HSPs)
chr3 (2-116)||(19665684-19665798)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 27228175 - 27227989
Alignment:
Q  1 ccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228175 ccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataa 27228076  T
Q  101 attatatttcaaaaaattctgtcttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 187  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228075 attatatttcaaaatattctgtcttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 27227989  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 27223980 - 27223798
Alignment:
Q  5 ttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaatta 104  Q
    |||||||| || || || ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||  | ||    
T  27223980 ttcttgggacaatcataatggaacaaattaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgacta 27223881  T
Q  105 tatttcaaaaaattctgtcttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 187  Q
    | |||| |||||||| |||  ||||||||| ||||||||||| ||| |||||||| |||  |||| |||||||||||||||||    
T  27223880 tgtttctaaaaattcagtcaaaataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtg 27223798  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 48639874 - 48639761
Alignment:
Q  32 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataag 131  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||||||| |||||||||||||||| ||  ||   |||||    
T  48639874 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttcaaaaaaatcaatcaccataag 48639775  T
Q  132 acccattggtcctt 145  Q
    ||| ||||||||||    
T  48639774 acctattggtcctt 48639761  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 48661517 - 48661442
Alignment:
Q  41 tgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa 116  Q
    |||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||||  ||||||||||||||||    
T  48661517 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaa 48661442  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 48667126 - 48666992
Alignment:
Q  27 acagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtctta 126  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||||  ||||||||||  |||| ||  ||       
T  48667126 acagataaaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgcc 48667027  T
Q  127 ataagacccattggtcctttatttcaaaacccaaa 161  Q
    ||||||||| |||||||||| ||| |||| |||||    
T  48667026 ataagacccgttggtcctttgtttaaaaatccaaa 48666992  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 48585301 - 48585217
Alignment:
Q  32 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa 116  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| |||||||||| |||||    
T  48585301 ttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttcgaaaaa 48585217  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 11547239 - 11547058
Alignment:
Q  1 ccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataa 100  Q
    |||||||| ||| ||||| | || |||||| ||||||| || ||||||||||||||||| || || || |||||||| ||| | ||||||||||||||      
T  11547239 ccatttctagggacactcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattg 11547140  T
Q  101 attatatttcaaaaaattctgtcttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatat 182  Q
    | |||||| ||||||| ||  ||   |||||||| |||||||| || ||| |||| ||||| |  |||  ||||||||||||    
T  11547139 actatattacaaaaaaatccatccacataagacctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatat 11547058  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 48618327 - 48618487
Alignment:
Q  1 ccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataa 100  Q
    |||||||| ||| ||||| | || |||||| ||||||| ||||||||||| |||||||| || || || |||||||| ||| | || |||||||||||      
T  48618327 ccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattg 48618426  T
Q  101 attatatttcaaaaaattctgtcttaataagacccattggtcctttatttcaaaacccaaa 161  Q
    | ||||||||||||||  |  | ||  |||||||||||||||| || ||||| || |||||    
T  48618427 actatatttcaaaaaaaacaattttcgtaagacccattggtccattgtttcacaatccaaa 48618487  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 48628838 - 48628731
Alignment:
Q  37 aacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagaccca 136  Q
    |||||||| ||| | ||||||||||| | |||||||||||| ||| | || |||||||||||  ||||| |||| ||||| || ||| | || |||||||    
T  48628838 aacttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtcctcattagaccca 48628739  T
Q  137 ttggtcct 144  Q
    ||||||||    
T  48628738 ttggtcct 48628731  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 48653121 - 48652986
Alignment:
Q  8 ttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatat 107  Q
    ||||| ||||| | || ||||| |||||||| || |||||||| |||||||| || || || |||||||| ||| | || |||||||||||  | |||||    
T  48653121 ttgggacactcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatat 48653022  T
Q  108 ttcaaaaaattctgtcttaataagacccattggtcc 143  Q
    |||||| || ||  || | |||||||||||||||||    
T  48653021 ttcaaacaaatcaatcctcataagacccattggtcc 48652986  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 48656546 - 48656434
Alignment:
Q  31 attaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataa 130  Q
    |||||||| ||||||||||  || |||||||| |||||||||||||| ||| | || | |||||| ||  ||||||||||  |||| ||  || | ||||    
T  48656546 attaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataa 48656447  T
Q  131 gacccattggtcc 143  Q
    |||| ||||||||    
T  48656446 gaccaattggtcc 48656434  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 19665684 - 19665798
Alignment:
Q  2 catttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaa 101  Q
    ||||||| ||| ||||| | || |||||| ||||||| || ||||||||||||||||||||||||||||  ||||| ||| | || ||||||| |||  |    
T  19665684 catttctagggacactcattttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcga 19665783  T
Q  102 ttatatttcaaaaaa 116  Q
     |||||||| |||||    
T  19665784 ctatatttcgaaaaa 19665798  T

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