View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9715_low_4 (Length: 310)
Name: NF9715_low_4
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 32858576 - 32858299
Alignment:
| Q |
11 |
cataggtgacggtagccactgagtactaaacagtaagctgaagatattatcatttttcccttccagctggagatattatctacttcaaaggttttgcttt |
110 |
Q |
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| T |
32858576 |
cataggtgacggtagccactgagtgctaaacagtaagctgaagatattttcatttttcccttccagctggagatattatctacttcaaaggttttgcttt |
32858477 |
T |
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| Q |
111 |
gtgnnnnnnnnnnnnnnnnnnnntggtggaaaaactacaagcatgggagatatggcctcgcacactttcatgcctttttcttgttgttacacttcgtaac |
210 |
Q |
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| T |
32858476 |
gtgatatatatatatatatat--tggtggaaaaactacaaacgtgggagatatggcctcgcacactttcatgcttttttcttgttgttacacttcgtaac |
32858379 |
T |
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| Q |
211 |
ataaagcagcacttgttttataatcagcagaaaggacctgactatccctgatctatatatatagtagaagacgaatgactaatg |
294 |
Q |
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| T |
32858378 |
ataaagcagcacttgttttataatcagcagaaaggacctgactatccctgatcta----tatagtagaagacgaatgactaatg |
32858299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 32850632 - 32850604
Alignment:
| Q |
63 |
tttttcccttccagctggagatattatct |
91 |
Q |
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| T |
32850632 |
tttttcccttccagctggagatattatct |
32850604 |
T |
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