View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9715_low_6 (Length: 292)

Name: NF9715_low_6
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9715_low_6
NF9715_low_6
[»] chr7 (2 HSPs)
chr7 (144-264)||(5378130-5378250)
chr7 (18-78)||(5378004-5378064)
[»] chr6 (4 HSPs)
chr6 (191-284)||(19001013-19001106)
chr6 (18-78)||(19000893-19000953)
chr6 (194-257)||(22324422-22324489)
chr6 (21-70)||(22324299-22324348)
[»] chr3 (1 HSPs)
chr3 (208-257)||(23219650-23219699)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 144 - 264
Target Start/End: Original strand, 5378130 - 5378250
Alignment:
Q  144 ataattataattcatctgctaattattattttcaaagacaaggtgactttttcatctgctaatgtttttgttgaaagaattcatctgctaatgttaatac 243  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5378130 ataattataattcatctgctaattattatttttaaagacaatgtgactttttcatctgctaatgtttttgttgaaagaattcatctgctgatgttaatac 5378229  T
Q  244 ttaactaagcattgatgtcgt 264  Q
    |||||||||||||||||||||    
T  5378230 ttaactaagcattgatgtcgt 5378250  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 5378004 - 5378064
Alignment:
Q  18 ggaaaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggtaatttgcat 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5378004 ggaaaaagatggagaaggctgaaggcttcaatttttatcattgcaaaatggtaatttgcat 5378064  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 19001013 - 19001106
Alignment:
Q  191 tttttcatctgctaatgtttttgttgaaagaattcatctgctaatgttaatacttaactaagcattgatgtcgttgatattaatccatcttatt 284  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  19001013 tttttcatttgctaatgtttttgttgaaagaattcatctcctaatgttaatacttaactaagcattgatctcgctgatattaattcatcttatt 19001106  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 19000893 - 19000953
Alignment:
Q  18 ggaaaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggtaatttgcat 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19000893 ggaaaaagatggagaaggctgaaggcttcaatttttatcattgcaaaatggtaatttgcat 19000953  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 22324422 - 22324489
Alignment:
Q  194 ttcatctgctaatgtttt----tgttgaaagaattcatctgctaatgttaatacttaactaagcattg 257  Q
    ||||||||||||||||||    | |||||||||||||||||||| |||||||| ||||||||||||||    
T  22324422 ttcatctgctaatgttttgtttttttgaaagaattcatctgctattgttaatatttaactaagcattg 22324489  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 22324299 - 22324348
Alignment:
Q  21 aaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggta 70  Q
    |||||||||||||||  ||||||||||||||||  |||||||||||||||    
T  22324299 aaaagatggagaaggccgaaggcttcaattttttgcattgcaaaatggta 22324348  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 23219650 - 23219699
Alignment:
Q  208 tttttgttgaaagaattcatctgctaatgttaatacttaactaagcattg 257  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  23219650 ttttttttgaaagaatccatctgctaatgttaatatttaactaagcattg 23219699  T

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