View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9715_low_7 (Length: 263)
Name: NF9715_low_7
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 5378250 - 5378487
Alignment:
| Q |
8 |
tattaatccatcttatttttcacatgttatgttaataattaattttagaaataaaatgtattttggtgcatgaattcttctataatttaagtttttggag |
107 |
Q |
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| T |
5378250 |
tattaattcatcttatttttcacatgttatgttaataattaattctagaaataaaatgtattttggtgcatgaattcttctataatttaagtttttggag |
5378349 |
T |
|
| Q |
108 |
taaagaattttttatggatgatagttttcttccaagtggaannnnnnnnnnnnnacatataaatgttatattgacacttactcaaagggttttctcaaaa |
207 |
Q |
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| T |
5378350 |
taaagaattctttatggatgacagttttcttccaagtggaattgtctgttctttacatataaatgtcatattgacacttactcaaagggtttgcttaaaa |
5378449 |
T |
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| Q |
208 |
tttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
5378450 |
tttgtcataaatctacaacaatagataaaggtaatgag |
5378487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 19001087 - 19001327
Alignment:
| Q |
5 |
tgatattaatccatcttatttttcacatgttatgttaataattaattttagaaataaaatgtattttggtgcatgaattcttctataatttaagtttttg |
104 |
Q |
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| T |
19001087 |
tgatattaattcatcttatttttcacatgttatgttaataattaattctagaaataaaatgtattttgttgcatgaattcttctataatttatgtttttg |
19001186 |
T |
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| Q |
105 |
gagtaaagaattttttatggatgatagttttcttccaagtggaannnnnnnnnnnnnacatataaatgttatattgacacttactcaaagggttttctca |
204 |
Q |
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| T |
19001187 |
gagtaaagaattctttatggatgatagtttccttccaagtggaattgtttgttctttacatataaatgtcatattgacacttactcaaagggtttgctca |
19001286 |
T |
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| Q |
205 |
aaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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| T |
19001287 |
aaatttgtcataaatctacgacaatagataaaggtaatgag |
19001327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 22324491 - 22324728
Alignment:
| Q |
5 |
tgatattaatccatcttatttttcacatgttatgttaataattaattttagaaataaaatgtattttggtgcatgaattcttctataatttaagtttttg |
104 |
Q |
| |
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|||||||||| |||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||| ||| |
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| T |
22324491 |
tgatattaattaatcttatttttcacattttacgttaataattaagtctagaaataaaatgtattttggtgcatgaa---ttctataaaataagttattg |
22324587 |
T |
|
| Q |
105 |
gagtaaagaattttttatggatgatagttttcttccaagtggaannnnnnnnnnnnnacatataaatgttatattgacacttactcaaagggttttctca |
204 |
Q |
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| T |
22324588 |
gagtaaaaacttctttatggatgatactttacttccaagtggaattgtctgttctttacatataaatgtcatattgacacttgctcaaagggtttgctca |
22324687 |
T |
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| Q |
205 |
aaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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| T |
22324688 |
aaatttgacataaatctacaacaatagataaaggcaatgag |
22324728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 22679897 - 22679980
Alignment:
| Q |
162 |
acatataaatgttatattgacacttactcaaagggttttctcaaaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
22679897 |
acatataaatgtcatattgacacttgctcaaagggttttctcaaaatttgacataaatctacaacaatagataaaggcaatgag |
22679980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 23219699 - 23219942
Alignment:
| Q |
3 |
gttgatattaatccatcttatttttcacatgttatgttaata--attaattttagaaataaaatgtattttggtgcatgaattcttctataatttaagtt |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23219699 |
gttgatattaactcatcttatttttcacatgttacgttaatataattaagtctagaaataaaatgtattttggtgcatgaattcttctataaaacaagtt |
23219798 |
T |
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| Q |
101 |
tttggagtaaagaattttttatggatgatagttttcttccaagtggaannnnnnnnnnnnnacatataaatgttatattgacacttactcaaagggtttt |
200 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| ||||||||| |||||||||| | |||||||||||| |||||||||||| |
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| T |
23219799 |
attggagtaaagaattctttatggatgatactttactttcaagtggaattgtatgttctttacatataaatatcatattgacacttgctcaaagggtttg |
23219898 |
T |
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| Q |
201 |
ctcaaaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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| T |
23219899 |
ctcaaaatttgacataaatc-acaacaatagataaaggcaatgag |
23219942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 22644819 - 22644736
Alignment:
| Q |
162 |
acatataaatgttatattgacacttactcaaagggttttctcaaaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
22644819 |
acatataaatgtcatattgacacttgctcaaagggttttctcaaaatttgacataaatctacaacaatagataaaggcaatgag |
22644736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 27031636 - 27031717
Alignment:
| Q |
164 |
atataaatgttatattgacacttactcaaagggttttctcaaaatttttcataaatctacaacaatagataaaggtaatgag |
245 |
Q |
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|||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27031636 |
atataattgtcatattgacacttgctcaaagagttttctcaaaatttgacataaatctacaacaatagataaaggtaatgag |
27031717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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