View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9715_low_8 (Length: 263)
Name: NF9715_low_8
Description: NF9715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9715_low_8 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 20373646 - 20373896
Alignment:
| Q |
13 |
cagagaaaaaacacaaacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgt |
112 |
Q |
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| T |
20373646 |
cagagaaaaaacacaaacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgt |
20373745 |
T |
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| Q |
113 |
gctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattctaatcaacatataaa |
212 |
Q |
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| T |
20373746 |
gctgcaacaattttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattaaagattagattctaatcaacatataaa |
20373845 |
T |
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| Q |
213 |
taatgagtaataattcttgcttggatgcactaggtctaaaaacaagcagaa |
263 |
Q |
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| T |
20373846 |
taatgagtaataattcttgcttggatgcactaggtctaaaaacaagcagaa |
20373896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 20423626 - 20423459
Alignment:
| Q |
31 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaac |
130 |
Q |
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| T |
20423626 |
aaactaccaagcaccaaagcccaccgcatccactagaaggtcacaccatacacgaacgacgagctgacaa-cattgatttgttctgcaacaactttcaat |
20423528 |
T |
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| Q |
131 |
cgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
199 |
Q |
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| T |
20423527 |
cgtgctgacatgaatacaaacctacatcacaggtaaaatgagggctgtgttattaaagattagattcta |
20423459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 20339771 - 20339679
Alignment:
| Q |
100 |
aacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacat--gagggctatgttattgaagat |
190 |
Q |
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| T |
20339771 |
aacgttgaactgggctgcaacaaccttcaaccgtgctgccctcaatacaaccctacaccaaaggtaacatacgagggctatgttattaaagat |
20339679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 20442680 - 20442526
Alignment:
| Q |
42 |
caccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccat |
141 |
Q |
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| T |
20442680 |
caccaacgcaaaccgcagccactggaaggtcacaccatac--gaacgacgagctgacaa-cattgatgtgttctggaacaacttttaaccgtgctatcat |
20442584 |
T |
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| Q |
142 |
gaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
199 |
Q |
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| T |
20442583 |
gaatacaaacctacatcataggtaaaatgtgggctgtgttattaaagattagattcta |
20442526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 20132831 - 20132916
Alignment:
| Q |
114 |
ctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
199 |
Q |
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| T |
20132831 |
ctgcaacaaccttcaattgtgctcccatgaatacaaccctacacaaaatgtaacatgagggctatgttattaaaggttggattcta |
20132916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 20140036 - 20140146
Alignment:
| Q |
92 |
agctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctaca---ccacaggtaacatgagggctatgttattgaag |
188 |
Q |
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| T |
20140036 |
agctgatcaacgttgaagtgtgctgcagtaaccttcaattgtgctcccatgaatacaaccctacaatcccacaggtgacatgagggttatgttattaaag |
20140135 |
T |
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| Q |
189 |
attagattcta |
199 |
Q |
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| T |
20140136 |
agtagattcta |
20140146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 20408025 - 20407959
Alignment:
| Q |
31 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctga |
97 |
Q |
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| T |
20408025 |
aaactaccaagcaccaacgcaaaccgcagctactagaaggtcacaccatacacgaacgacgagctga |
20407959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 15963194 - 15963142
Alignment:
| Q |
88 |
gaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgcca |
140 |
Q |
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| T |
15963194 |
gaggagctgatcaacgttgaagtgtgctgcaacaactttcaaccatgctgcca |
15963142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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