View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_high_1 (Length: 547)
Name: NF9716_high_1
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 541
Target Start/End: Original strand, 35626382 - 35626895
Alignment:
| Q |
19 |
atgttcctcattcacaagctcttctggtatctccataatcttactagcaaaagaaaataatgcagctgcgtatcttgttttcgttgcattcattataact |
118 |
Q |
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| T |
35626382 |
atgttcctcattcacaagctcttctggtatctccataatcttactagcaaaagaaaataatgcagctgcgtatcttgttttcgttgcattcattataact |
35626481 |
T |
|
| Q |
119 |
ctatgttcacatgcacgtatccttccgttactccatatctagcacataaaaaatacatctaaattagaagagatatgtgtcatctaatcaaaatattatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35626482 |
ctatgttcacatgcacgtatccttccgttactccatatctagcacataaaaaatacatctaaattagaagagatatgtgtcatctgatcaaaatattatt |
35626581 |
T |
|
| Q |
219 |
gagtttggtcggacaatcattttttagaccaattaatgtttatgattgagaattagaggtatactcaccgtaaatgcgtcacctgctaatacaacaaagg |
318 |
Q |
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||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
35626582 |
gagttcggtgggacaatcattttttagaac---------ttatgattgagaattagaggtatactcaccgtaaatgcatcacctgctaagacaacaaagg |
35626672 |
T |
|
| Q |
319 |
aggaaggtgaggcctcaacctcagtccattctccatttttcaatttgatttgcaagccatttagattattcagctgatgcactacagatataatggtcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35626673 |
aggaaggtgaggcctcaacctcagtccattctccatttttcaatttgatttgcaagccatttagattattcagctgatgcactacagatataatggtcaa |
35626772 |
T |
|
| Q |
419 |
gtctgaatgaggtgttaatcccaaatcattctcatccatctctcgtgttctgtatttcaagcatcgaatgagataattgcttgattctatcaatgattca |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35626773 |
gtctgaatgaggtgttaatcccaaatcattctcatccatctctcgtgttctgtatttcaagcatcgaatgagataattgcttgattctatcaacgattca |
35626872 |
T |
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| Q |
519 |
catattttcatatcaacaccata |
541 |
Q |
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||||||||| ||||||||||||| |
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| T |
35626873 |
catattttcgtatcaacaccata |
35626895 |
T |
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