View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9716_high_11 (Length: 294)
Name: NF9716_high_11
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 26120658 - 26120916
Alignment:
| Q |
18 |
tttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgnnnnnnnagctctgcatttttatctgataaaagtgccacagtttttgattca |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26120658 |
tttcccttgctctgcaatccgaagcctttccgtcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccacagtttttgattca |
26120757 |
T |
|
| Q |
118 |
cattcagttgaattttcctacnnnnnnnnnnnnnnnntcatgtttgtgaaagaagaaagctaagagcatccaataagaactttgattactacagtggtag |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26120758 |
cattcagttgaattttcctacaaaagaaaaaataaaatcatgtttgtgaaagaagaaagctaagagcatccaataagaactccgattactacagtggtag |
26120857 |
T |
|
| Q |
218 |
cgatccttgatttgcgtagagaataaggattgttttgcattaagggtccttctatttct |
276 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26120858 |
cgatccttgatttgcgtagagattaaggattgttttgcattaagggtccttctatttct |
26120916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26097356 - 26097443
Alignment:
| Q |
18 |
tttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgnnnnnnnagctctgcatttttatctgataaaagtgccaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26097356 |
tttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccaca |
26097443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 26038323 - 26038439
Alignment:
| Q |
165 |
gaaagaagaaagctaaga-gcatccaataagaactttgattactacagtggtagcgatccttgatttgcgtagagaataaggattgttttgcattaaggg |
263 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
26038323 |
gaaaaaagaaagctaagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcattaaggg |
26038422 |
T |
|
| Q |
264 |
tccttctatttctctgc |
280 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
26038423 |
tccttctctttctctgc |
26038439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26127300 - 26127347
Alignment:
| Q |
18 |
tttcccttgctctgcaagccgaagcctttccgtcatctccctcaactg |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26127300 |
tttcccttgctctgcaagccgaagcctttccctcaactccctcaactg |
26127347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 26036723 - 26036766
Alignment:
| Q |
18 |
tttcccttgctctgcaagccgaagcctttccgtcatctccctca |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
26036723 |
tttcccttgctctgcaagccgaagcctttctgtcaactccctca |
26036766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 26127432 - 26127475
Alignment:
| Q |
155 |
tcatgtttgtgaaagaagaaagctaagagcatccaataagaact |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
26127432 |
tcatgtttatgaaagaagaaagctaagagcatccaataataact |
26127475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 26085130 - 26085162
Alignment:
| Q |
73 |
agctctgcatttttatctgataaaagtgccaca |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
26085130 |
agctctgcatttttatctgataagagtgccaca |
26085162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 26128799 - 26128871
Alignment:
| Q |
207 |
tacagtggtagcgatccttgatttgcgtagagaataaggattgttttgcattaagggtccttctatttctctg |
279 |
Q |
| |
|
||||| |||| | ||| ||||| ||| |||||||||||| ||||| | ||| |||||||||||| |||||||| |
|
|
| T |
26128799 |
tacagcggtaacaatctttgatatgcttagagaataagggttgttcttcatcaagggtccttctctttctctg |
26128871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University