View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9716_high_3 (Length: 452)

Name: NF9716_high_3
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9716_high_3
NF9716_high_3
[»] chr1 (5 HSPs)
chr1 (5-267)||(17185481-17185733)
chr1 (5-267)||(17194713-17194965)
chr1 (39-253)||(17175589-17175801)
chr1 (333-431)||(17185799-17185897)
chr1 (335-431)||(17175911-17176009)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 17185481 - 17185733
Alignment:
Q  5 acaagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaagaga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  17185481 acaagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaatcaaatgaagaagaaaaggaaagttagtgtttagggtttaagaga 17185580  T
Q  104 gaaaagagaagcaatgcgtgtttagggtttcctttcaattaagggtactgtgagttgaatcaattctcacttatatatagtattcaatatcagttagggt 203  Q
    ||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||          |||| |||||||||    
T  17185581 gaaaaaagaagcaatgcgtg-ttagggcttcctttcaattaagtgtactgtgagttgaatcaattctcacttatat----------atattagttagggt 17185669  T
Q  204 ttctctttttcgcaaacaaatatttactaatctatcctctaggaagcttcctttcaattaagtg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17185670 ttctctttttcgcaaacaaatatttactaatctatcctctaggaagcttcctttcaattaagtg 17185733  T

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Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 17194965 - 17194713
Alignment:
Q  5 acaagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaagaga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  17194965 acaagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaatcaaatgaagaagaaaaggaaagttagtgtttagggtttaagaga 17194866  T
Q  104 gaaaagagaagcaatgcgtgtttagggtttcctttcaattaagggtactgtgagttgaatcaattctcacttatatatagtattcaatatcagttagggt 203  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||          |||| |||||||||    
T  17194865 gaaaagagaagcaatgcgtg-ttagggcttcctttcaattaagtgtactgtgagttgaatcaattctcacttatat----------atattagttagggt 17194777  T
Q  204 ttctctttttcgcaaacaaatatttactaatctatcctctaggaagcttcctttcaattaagtg 267  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  17194776 ttctctttttcgcaaacaaatatttactaaactatcctctaggaagattcctttcaattaagtg 17194713  T

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Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 39 - 253
Target Start/End: Original strand, 17175589 - 17175801
Alignment:
Q  39 tgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaaga-------gagaaaagagaagcaatgcgtgtttaggg 130  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||       ||||| |||||||| ||||||||||||||    
T  17175589 tgagcagccatagccatgaaatcaattgaagaagaaaaggaaagttagcgtttagggtttaagaaagaagagagaagagagaagctatgcgtgtttaggg 17175688  T
Q  131 tttcctttcaattaagggtactgtgagttgaatcaattctcacttatatatagtattcaatatcagttagggtttctctttttcgcaaacaaatatttac 230  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||  ||||||||    
T  17175689 tttcctttcaattaagtgtactgtgagttgaatcaattctcacttatatat--------atattagttagggtttctctttttcgcaaac--atatttac 17175778  T
Q  231 taatctatcctctaggaagcttc 253  Q
    |||| |  |||||||||| ||||    
T  17175779 taatttgccctctaggaaacttc 17175801  T

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Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 17185799 - 17185897
Alignment:
Q  333 gttaataaatcccttcagtaaaatattaaaatcatttttctaaattatataatttttatgatgactattcttattaaatgaccaaaatatattatattt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17185799 gttaataaatcccttcagtaaaatattaaaatcatttttctaaattatataatttttatgatgactattcttattaaatgaccaaaatatattatattt 17185897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 17175911 - 17176009
Alignment:
Q  335 taataaatcccttcagtaaaatattaaaatcatttttctaaattatataa--tttttatgatgactattcttattaaatgaccaaaatatattatattt 431  Q
    ||||||||||||||| ||||| |||||||| | |||||||||| |||| |  ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17175911 taataaatcccttcattaaaaaattaaaataacttttctaaatgatattagatttttatgacgactactcttattaaatgaccaaaatatattatattt 17176009  T

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