View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_high_8 (Length: 364)
Name: NF9716_high_8
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 1036770 - 1036931
Alignment:
| Q |
195 |
agtatgatacaatagcgtagtaaatcaaatcttataaacatttcaacttgatcatgattcaacactagagtttcacaagcttgttctacaatatcttttg |
294 |
Q |
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| T |
1036770 |
agtatgatacaatagcgtagtaaatcaaatcttataaacatttcaacttgatcatgattcaacactagagtttcacaagcttgttgtacaatatcttttg |
1036869 |
T |
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| Q |
295 |
aaatgaaatatatcaataagaaaccatgtcaattgaaatagatcatgccatttgcctatgct |
356 |
Q |
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| T |
1036870 |
aaatgaaatatatcaataagaaaccatgtcaattgaaatagatcatgccatttgcctatgct |
1036931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 1036585 - 1036710
Alignment:
| Q |
12 |
aggtcagctaaaataccagttttttcaggtagctgctata--gtgctataacgtagcggaatttgaacaaactgtagttgttttgcaatagatgatttat |
109 |
Q |
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| T |
1036585 |
aggtcaggcaaaataccagttttttcaagtagctgctatatagtactacagcgtagcggaatttgaacaaactgtagttgttttgcaatagatgaattat |
1036684 |
T |
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| Q |
110 |
gcacaagataatgtaaactcactgta |
135 |
Q |
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| T |
1036685 |
gcacaagataatgtaaagtcactgta |
1036710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 39647212 - 39647177
Alignment:
| Q |
45 |
tgctatagtgctataacgtagcggaatttgaacaaa |
80 |
Q |
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| T |
39647212 |
tgctatagtgctataacgcagcggaatttgaacaaa |
39647177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 17223400 - 17223456
Alignment:
| Q |
52 |
gtgctataacgtagcggaatttgaacaaactgtagttgttttgcaatagatgattta |
108 |
Q |
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| T |
17223400 |
gtgctatagcgtagcggaattttaacaaattgttgttgttttgcgatacacgattta |
17223456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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