View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9716_high_9 (Length: 360)
Name: NF9716_high_9
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 349
Target Start/End: Original strand, 1036223 - 1036569
Alignment:
| Q |
4 |
tcatttcttatatatctcacttgtttgatgtaggtgaacaccagagattgtgatactattttaaaaggcatacagtttggccttttgggttgtttgagta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
1036223 |
tcatttcttatatatctcacttgtttgatgtaggtgaacaccagggattgtgatactattgtaaaaggcatacagtttggcctgttcggttgtttgagta |
1036322 |
T |
|
| Q |
104 |
ctgtctctacctttgtttccgagttcaacgaaatgagagaaagcgagcacccttggagagcatatgtttatactataaccacaatatgttcctcattctt |
203 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
1036323 |
ctgtctctacctttgttgccgagttcaatgaaatgagagaaagcgagcacccttggagagcatatgtttatactataatcacaatatgttcctcgttctt |
1036422 |
T |
|
| Q |
204 |
tttagggatcttaatatactgtgtgcctatttggagaatggatgaattataaatggcaggtagacatagaaggtaatattgttgtgacagttcattgact |
303 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||| ||| |
|
|
| T |
1036423 |
tttagggatcttaatatactctgtgcctatttggagaatggatgaaatataaatgtcaggtagccatagaaggtaatattgtcgtgacagtctatttact |
1036522 |
T |
|
| Q |
304 |
tgaaggaattaagcaatttcgagaact-agaataatctgttatctct |
349 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
1036523 |
tgaaggaattaagcaatttcgaaaaagcacaataatctgttatctct |
1036569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 9584542 - 9584509
Alignment:
| Q |
13 |
atatatctcacttgtttgatgtaggtgaacacca |
46 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
9584542 |
atatatctcacctgtttgatgtaggtgaacacca |
9584509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University