View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_11 (Length: 337)
Name: NF9716_low_11
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 48237361 - 48237054
Alignment:
| Q |
13 |
gagatgaaaagattgaggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaatta |
112 |
Q |
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| T |
48237361 |
gagatgaaaagattgaggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaatta |
48237262 |
T |
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| Q |
113 |
tgcaataggaacaaagtgctagtaacaattactaaacaaaataccaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237261 |
tgcaataggaacaaagtgctagtaacaattactaaacaaaatactaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaatt |
48237162 |
T |
|
| Q |
213 |
aagtgatggtaggaaagaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaaaatgtgtgataaacaggtgtgttgtacgaacatcaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237161 |
aagtgatggtaggaaagaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaaaatgtgtgataaacaggtgtgttgtacgaacatcaaa |
48237062 |
T |
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| Q |
313 |
atacagac |
320 |
Q |
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|||||||| |
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| T |
48237061 |
atacagac |
48237054 |
T |
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