View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_14 (Length: 220)
Name: NF9716_low_14
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 14128308 - 14128494
Alignment:
| Q |
34 |
ctatcatacaaaactcttaaggcctagattccctcaagatgctcatggcataaattaaggagaaaaactaggttagaaccttcatacaaattaattgcaa |
133 |
Q |
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| T |
14128308 |
ctatcatacaaaactcttaaggcctagattccctcaagatgctcatggcataaattaaggagaaaaactcggttggaaccttcatacaaattaattgcaa |
14128407 |
T |
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| Q |
134 |
agtgtacctcgcaaagagcacaatataagagagcaaagccatgtccatttcacttgcacacaaaaacatttcttttctttgcaaccc |
220 |
Q |
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| T |
14128408 |
agtgttcctctcaaagtgcacaataaaagagagcaaagccatgtccatttctcttgcacacaaaaacctttcttttctttgcaaccc |
14128494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 14124430 - 14124551
Alignment:
| Q |
56 |
cctagattccctcaagatgctcatggcataaattaaggagaaaaactaggttag--------aaccttcatacaaattaattgcaaagtgtacctcgcaa |
147 |
Q |
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| T |
14124430 |
cctagattcccttaacatgttcatggcataaattaaggagaaaaactcggttggaaaagtcaaatcttcatacaaattaattgcaaagtgttcctcg--a |
14124527 |
T |
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| Q |
148 |
agagcacaatataagagagcaaag |
171 |
Q |
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| T |
14124528 |
agtgcacaataaaagggagcaaag |
14124551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 14111383 - 14111437
Alignment:
| Q |
48 |
tcttaaggcctagattccctcaagatgctcatggcataaattaaggagaaaaact |
102 |
Q |
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| T |
14111383 |
tcttaaggcctagatatcctcaccatgctcgtggcatgaattaaggagaaaaact |
14111437 |
T |
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