View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9716_low_15 (Length: 203)

Name: NF9716_low_15
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9716_low_15
NF9716_low_15
[»] chr7 (5 HSPs)
chr7 (4-203)||(42415213-42415412)
chr7 (54-203)||(38176207-38176356)
chr7 (54-168)||(8178029-8178143)
chr7 (54-177)||(38195558-38195681)
chr7 (54-98)||(10486560-10486604)
[»] scaffold0094 (1 HSPs)
scaffold0094 (12-203)||(15182-15373)
[»] chr3 (7 HSPs)
chr3 (4-203)||(53920241-53920440)
chr3 (4-199)||(1930062-1930257)
chr3 (54-203)||(1527265-1527414)
chr3 (54-201)||(25500952-25501099)
chr3 (128-203)||(8690524-8690599)
chr3 (128-203)||(9042393-9042468)
chr3 (49-102)||(40316324-40316377)
[»] chr6 (2 HSPs)
chr6 (5-199)||(1100942-1101136)
chr6 (74-164)||(28909706-28909796)
[»] chr2 (8 HSPs)
chr2 (54-203)||(31015410-31015559)
chr2 (54-203)||(4318687-4318836)
chr2 (15-203)||(35581373-35581560)
chr2 (54-203)||(28626321-28626470)
chr2 (58-203)||(6409598-6409743)
chr2 (54-168)||(34212768-34212882)
chr2 (145-203)||(29370388-29370446)
chr2 (58-102)||(40357048-40357092)
[»] chr5 (7 HSPs)
chr5 (54-203)||(12186854-12187003)
chr5 (54-168)||(22497645-22497759)
chr5 (58-203)||(4428968-4429113)
chr5 (49-202)||(41787821-41787974)
chr5 (54-160)||(43391059-43391165)
chr5 (49-101)||(32912850-32912902)
chr5 (54-86)||(26917409-26917441)
[»] chr8 (5 HSPs)
chr8 (54-203)||(31385745-31385893)
chr8 (53-201)||(2703929-2704077)
chr8 (54-168)||(8618319-8618433)
chr8 (54-103)||(15074411-15074460)
chr8 (44-99)||(11743945-11744000)
[»] chr1 (6 HSPs)
chr1 (44-168)||(4816699-4816823)
chr1 (54-168)||(46342966-46343080)
chr1 (54-203)||(5299436-5299585)
chr1 (54-203)||(46496791-46496939)
chr1 (54-115)||(19023321-19023382)
chr1 (54-168)||(44585732-44585846)
[»] chr4 (1 HSPs)
chr4 (54-168)||(29542205-29542319)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 42415213 - 42415412
Alignment:
Q  4 gagtttggtggtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcata 103  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42415213 gagtttggtagtatcatatccgaatgtcggtcgcgtttaaaacattatccaaactttaggataagttttgttaggagacaagctaattttgtcgctcata 42415312  T
Q  104 cgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  42415313 cgttagctagggcgtctagattgaatgctcgtcaccaggagtttgatttgattccatcatatattgaaactattgtgagaaatgaaataatatgagtttt 42415412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 38176356 - 38176207
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
T  38176356 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg 38176257  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||||||||||||  || |  |||||  ||||||||||||||||||||    
T  38176256 attccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttt 38176207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 8178143 - 8178029
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||||| ||| | |||| ||||| ||| ||| |  ||||||| |    
T  8178143 aaactttaagataagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttttgattgg 8178044  T
Q  154 attccatcttgtatt 168  Q
    |||||||||||||||    
T  8178043 attccatcttgtatt 8178029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 38195681 - 38195558
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||  |  |||||||||| |||| |||||||||||  |||||| ||||| | |  ||| ||||| ||||||||| |||  |||||    
T  38195681 aaactttaagataagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcaccaagtgttcaatttg 38195582  T
Q  154 attccatcttgtattgaaactatt 177  Q
    ||||||||||||||||| ||||||    
T  38195581 attccatcttgtattgatactatt 38195558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 10486604 - 10486560
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgc 98  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  10486604 aaactttaagataagttttgttaggagacaagcaaattatgtcgc 10486560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 15182 - 15373
Alignment:
Q  12 tggtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagct 111  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15182 tggtatcatatccgaatgtcggtcgtgtttaaaacattatccaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagct 15281  T
Q  112 agggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  15282 agggcgtctagattgaatgctcgtcaccaagagtttgatttaattccattttatattgaaactattgtgagaaatgaaataatatgagtttt 15373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 53920241 - 53920440
Alignment:
Q  4 gagtttggtggtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcata 103  Q
    ||||||||| || ||||||| ||||| | ||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  53920241 gagtttggtagtctcatatctgaatgccggtcgcttttaaaacattatccaaactttaagatgagttttgttagaagacaagctaattttgtcgctcata 53920340  T
Q  104 cgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  53920341 cgttagctagggcgtctagattgaatgctcgtcaccaagagtttgttttgattccatcttgtattgaaactattgtgagaaatgaaataacatgagtttt 53920440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 1930062 - 1930257
Alignment:
Q  4 gagtttggtggtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcata 103  Q
    ||||||||| |||| |||||||| |||||  | | |||| || |  ||| ||||||||| |||||||||| ||||||| | ||||||| |||| ||||||    
T  1930062 gagtttggtagtattatatccgattgtcaagctcttttacaataacatccaaactttaaaataagttttgctaggagaaatgctaattatgtcactcata 1930161  T
Q  104 cgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgag 199  Q
    | |||||  ||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| ||||| |||||||    
T  1930162 ctttagcaggggcgtcaagattacatgctcgtcaccaacagtttgatttgattccatcttgtattgagactcttttgagaaaggaaataatatgag 1930257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 1527265 - 1527414
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
T  1527265 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg 1527364  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||||||||||||  || |  |||||  ||||||||||||||||||||    
T  1527365 attccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttt 1527414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 25500952 - 25501099
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||| || ||| ||||||||||| |||| |||||| ||||  ||||| ||||| || | |||| |||||||||||| ||  ||| |||||    
T  25500952 aaactttaagataaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttg 25501051  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtt 201  Q
    ||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  25501052 attccatcttgtattgaaactattgtgatgaatgaaataatataagtt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 8690524 - 8690599
Alignment:
Q  128 atgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||| | |||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||    
T  8690524 atgctcgtcaccaggtgtttgatttgattccatcgtgtattgactctattgtgagaaatgaaataatatgagtttt 8690599  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 9042393 - 9042468
Alignment:
Q  128 atgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||| | |||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||    
T  9042393 atgctcgtcaccaggtgtttgatttgattccatcgtgtattgactctattgtgagaaatgaaataatatgagtttt 9042468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 40316324 - 40316377
Alignment:
Q  49 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcat 102  Q
    |||| ||||||||| |||||||| |||| |||||||||||||| ||| ||||||    
T  40316324 tatccaaactttaacataagtttagttatgagacaagctaattatgttgctcat 40316377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 1101136 - 1100942
Alignment:
Q  5 agtttggtggtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatac 104  Q
    ||||| || |||| |||||||| |||||  | | |||| ||||  ||| ||||||||||| |||||||| |||||||||| | |||||||||||||||||    
T  1101136 agttttgtagtattatatccgattgtcaagctcttttacaacaacatccaaactttaagaaaagttttgctaggagacaatcaaattttgtcgctcatac 1101037  T
Q  105 gttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgag 199  Q
     ||||   ||| ||| |||||  |||||||||||||| |||||||||||||||||||||||||||| ||| || |||||| |||||| |||||||    
T  1101036 tttagtaggggagtcaagattacatgctcgtcaccaacagtttgatttgattccatcttgtattgagactcttttgagaagtgaaataatatgag 1100942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 28909796 - 28909706
Alignment:
Q  74 ttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttg 164  Q
    ||||||||||||| ||| ||||| ||||||  || ||||||| ||| | |||  | |||||||||||||  ||||||||||||||||||||    
T  28909796 ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttg 28909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 31015559 - 31015410
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||| |||||||||||| ||||| ||||||||| | ||||  ||||| | || |||  || || ||||||||||||||| ||||||||||    
T  31015559 aaactttaagataaattttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatttg 31015460  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||||||||||||||   |||||||||||||||||| |||||||||||    
T  31015459 attccatcttgtattgactatattgtgagaaatgaaataatatgagtttt 31015410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 4318836 - 4318687
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
T  4318836 aaactttaagataagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttg 4318737  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||||||||||||  || |  |||||  ||||||||||||||||||||    
T  4318736 attccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttt 4318687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 35581560 - 35581373
Alignment:
Q  15 tatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagg 114  Q
    ||||||||  |||||||| |||| |||| |||| ||||  ||||||||||||||||||||||| |||||| ||||| ||||||||||||| |  || |||    
T  35581560 tatcatatatgaatgtcactcgcttttacaacaatatcataactttaagataagttttgttagaagacaaactaatattgtcgctcatac-tctgcaagg 35581462  T
Q  115 gcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    | ||| |||||| || || ||||| ||   ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||||| |||||    
T  35581461 gtgtcaagattgtatcctagtcactaaatttttgatttgattccatcttatattaaaattattgggagaaatgaaataatatgcgtttt 35581373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 28626470 - 28626321
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || |||| || ||| | |||  | |||||||||||||  |||||||||    
T  28626470 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcaccaagtctttgatttg 28626371  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||| |||||||  || |  |||||  ||||||||| ||||||||||    
T  28626370 attccattttgtattccaaattgtgtgatgaatgaaatggtatgagtttt 28626321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 6409598 - 6409743
Alignment:
Q  58 tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc 157  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| ||  || ||||| | ||| | |||  | |||||||||||||  ||| |||||||||    
T  6409598 tttaagataagttttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatattacaagctcgtcaccaagtctttaatttgattc 6409697  T
Q  158 catcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||  |||  || |  |||||  ||||||||||||||||||||    
T  6409698 catcttaaattccaaattgtgtgatgaatgaaatgatatgagtttt 6409743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 34212768 - 34212882
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||| |||  ||||| || | ||| | |||  ||| || |||||| |  |||||||||    
T  34212768 aaactttaagataaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgatttg 34212867  T
Q  154 attccatcttgtatt 168  Q
    |||||||||| ||||    
T  34212868 attccatcttatatt 34212882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 29370388 - 29370446
Alignment:
Q  145 tttgatttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||| ||||| |||||||||||||||| || |||||| |||||| |||| ||||||    
T  29370388 tttgattagattctatcttgtattgaaactcttttgagaagtgaaataatataagtttt 29370446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 40357092 - 40357048
Alignment:
Q  58 tttaagataagttttgttaggagacaagctaattttgtcgctcat 102  Q
    |||||||||||||| |||| ||||||| |||||||||| ||||||    
T  40357092 tttaagataagtttagttatgagacaaactaattttgttgctcat 40357048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 12186854 - 12187003
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||| ||||| ||||  ||||| ||||  ||||| | || |||  |  || ||||||||||||||| ||||||||||    
T  12186854 aaactttaagataagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatttg 12186953  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||||||||||||||  |||||||||||||| |||| || ||||||||    
T  12186954 attccatcttgtattgactctattgtgagaaataaaataatttgagtttt 12187003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 22497759 - 22497645
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||||  ||||| |||| ||| | |||  ||||||||||||  |  |||||||||    
T  22497759 aaactttaagataagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgatttg 22497660  T
Q  154 attccatcttgtatt 168  Q
    ||||| |||||||||    
T  22497659 attccttcttgtatt 22497645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 4428968 - 4429113
Alignment:
Q  58 tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc 157  Q
    ||||||||||||||||||||||| ||||| |||| |||| | ||||  ||||| | || |||  || || |||||||| | |||  ||||||||||||||    
T  4428968 tttaagataagttttgttaggaggcaagcaaattctgtcacccatagcttagcaaaggtgtcaggaatgtatgctcgttagcaaatgtttgatttgattc 4429067  T
Q  158 catcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    |||||| ||||||  ||||||||| |||||||||  ||||||||||    
T  4429068 catcttctattgactctattgtgataaatgaaatattatgagtttt 4429113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 41787974 - 41787821
Alignment:
Q  49 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttg 148  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| ||| ||||||   ||||| ||||||||   ||  || |||  ||| ||||  || |    
T  41787974 tatccaaactttgagataaattttgttaggagacaagctaattatgttgctcattgattagcaagggcgtcacaatataacgctaatcatcaagttttcg 41787875  T
Q  149 atttgattccatcttgtattgaaactattgtgagaaatgaaatgatatgagttt 202  Q
    | ||||||||||||||||||     ||||||||||||||||||||||| |||||    
T  41787874 agttgattccatcttgtatttcccatattgtgagaaatgaaatgatataagttt 41787821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 43391165 - 43391059
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||| |||||||||| || |||||||||| |||| |||||| ||||| ||||| |||| ||| | | || ||||| |||| || |  |||||||||    
T  43391165 aaactttatgataagttttattcggagacaagcaaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttg 43391066  T
Q  154 attccat 160  Q
    |||||||    
T  43391065 attccat 43391059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 32912850 - 32912902
Alignment:
Q  49 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctca 101  Q
    |||| ||||||||||||||||||||||||| ||| ||| |||||||| |||||    
T  32912850 tatccaaactttaagataagttttgttaggcgacgagcaaattttgttgctca 32912902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 26917409 - 26917441
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagc 86  Q
    ||||||||||||||||||| |||||||||||||    
T  26917409 aaactttaagataagttttattaggagacaagc 26917441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 31385893 - 31385745
Alignment:
Q  54 aaactttaagat-aagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgattt 152  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||| | |||  ||||| |||| ||| ||||||||||    
T  31385893 aaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagc-agggtgtcaaaattacatgcttgtcatcaacagtttgattt 31385795  T
Q  153 gattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||| ||||||| |||||||| || ||||||| ||||| |||||| ||||    
T  31385794 gattctatcttgtgttgaaactctt-tgagaaaggaaataatatgattttt 31385745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 2704077 - 2703929
Alignment:
Q  53 gaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgattt 152  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| | || ||||  |  ||| | ||| |||||||    | ||||||    
T  2704077 gaaactttaagataagttttgttaggagacaagcaaattatgtcgctcatactttaacaagagcgttaaagttggacgcttgtcaccatatctatgattt 2703978  T
Q  153 gattccatcttgtattgaaactattgtgagaaatgaaatgatatgagtt 201  Q
    ||||||||||| ||||    ||||| ||| |||||||||||||||||||    
T  2703977 gattccatcttatatttcctctattttgataaatgaaatgatatgagtt 2703929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 8618433 - 8618319
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||||||  ||||| |||| ||| | |||  || ||||||||||    || ||||||    
T  8618433 aaacttcaagataagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgatttg 8618334  T
Q  154 attccatcttgtatt 168  Q
    |||||||||||||||    
T  8618333 attccatcttgtatt 8618319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 15074460 - 15074411
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcata 103  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  15074460 aaactttaagataagttttgttagaagacaagcaaattgtgtcgctcata 15074411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 11743945 - 11744000
Alignment:
Q  44 aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgct 99  Q
    ||||||||| |||||||||||||| |||||| ||||||||| | |||| |||||||    
T  11743945 aacattatccaaactttaagataaattttgtaaggagacaaacaaattatgtcgct 11744000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 4816699 - 4816823
Alignment:
Q  44 aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaaga 143  Q
    |||||| || |||||||||||||| || ||| ||||||||||| |||| |||||| ||||  ||||| |||| ||| | |||| |||||||||||||||     
T  4816699 aacattttccaaactttaagataaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagt 4816798  T
Q  144 gtttgatttgattccatcttgtatt 168  Q
     |||||||||||| |||||| ||||    
T  4816799 ctttgatttgatttcatcttatatt 4816823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 46342966 - 46343080
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||  ||||| |||  ||| | |||  ||| | |||||||    |||||||||    
T  46342966 aaactctaagataagttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgatttg 46343065  T
Q  154 attccatcttgtatt 168  Q
    ||| |||||||||||    
T  46343066 atttcatcttgtatt 46343080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 5299436 - 5299585
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||| ||||||||| |||||||| ||||  ||||| |||   ||||| |||| | | | ||||  |||||||||||| |  ||  |||||    
T  5299436 aaactttaagataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgtcaccacgttttcaatttg 5299535  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||||||  |||||| | || ||| |||| |||||||||||    
T  5299536 attccatcttgtattgctactattttaaggaataaaataatatgagtttt 5299585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 46496791 - 46496939
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||| ||||||||||||||||| ||||||   |||| |||   ||||| | || | | |  ||| ||||||||||||| |  ||| |||||    
T  46496791 aaactttaagataggttttgttaggagacaaactaattcgatcgcacattgcttagcaaaggaggcaaatttgtatgctcgtcaccaggttttttatttg 46496890  T
Q  154 attccatcttgtattgaaactattgtgagaaatgaaatgatatgagtttt 203  Q
    ||||||||||||||||  |||| | |||| |||||||| |||||||||||    
T  46496891 attccatcttgtattgctacta-tctgaggaatgaaataatatgagtttt 46496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 19023382 - 19023321
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctaggg 115  Q
    ||||||||||||||||||||||||||||||| | |||| | || ||||||  ||||||||||    
T  19023382 aaactttaagataagttttgttaggagacaaacaaattatatcactcatagcttagctaggg 19023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 44585846 - 44585732
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    ||||||||||||||||||||| ||||||||  | ||| ||||||||||||  ||||| |||| ||  |  ||  ||| | |||||||||  ||||||||     
T  44585846 aaactttaagataagttttgtcaggagacagacgaatgttgtcgctcatagcttagcaagggtgttgatgttacatgtttgtcaccaagtttttgattta 44585747  T
Q  154 attccatcttgtatt 168  Q
    |||||||| ||||||    
T  44585746 attccatcatgtatt 44585732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 29542205 - 29542319
Alignment:
Q  54 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 153  Q
    |||||||||||||| ||||||||||| |||||| |||| |||||| |||   |||||||||| ||| | |||| | ||||||||||| |  ||||||| |    
T  29542205 aaactttaagataaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtacgctcgtcaccatgtttttgattcg 29542304  T
Q  154 attccatcttgtatt 168  Q
    |||||||||||||||    
T  29542305 attccatcttgtatt 29542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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