View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_2 (Length: 533)
Name: NF9716_low_2
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 33423147 - 33422631
Alignment:
| Q |
1 |
tactgttagaaaacaatgggaattccacgggtgaataattactgattaattagtttcactttttacttaacttattatcttgttgaaccaatgaatggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423147 |
tactgttagaaaacaatgggaattccacgggtgaataattactgattaattagtttcactttttacttaacttattatcttgttgaaccaatgaatggtt |
33423048 |
T |
|
| Q |
101 |
ggttagttcttaattaagtgtaacattt-gtggtgaataaaatcaggtatattgtgtcagattgtggagctgttgggatcatacatgatgagcaagggta |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423047 |
ggttagttcttaattaagtgtaacattttgtggtgaataaaatcaggtatattgtgtcagattgtggagctgttgggatcatacatgatgagcaagggta |
33422948 |
T |
|
| Q |
200 |
tgcaaaatcagcagaggatgctgtagctgatgttcttcatgctggtatatatttagtgatatcttaccctctttttaaattgttattatctttttcttgc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33422947 |
tgcaaaatcagcagaggatgctgtagctgatgttcttcatgctggtatatatttagtgatatcttaccctcttcttaaattgttattatctttttcttgc |
33422848 |
T |
|
| Q |
300 |
tttgttttattatgtgataattctaataaccatacaattaaatcttggttatgagtgaaatgaattcacaaagtgtaaaggttaattacctaatctgcaa |
399 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33422847 |
tttgatttattatgtgataattctaataaccatacaattaaatcttggttatgagtgaaatgaattcacaaagtgtaaaggttaattacctaatctgcaa |
33422748 |
T |
|
| Q |
400 |
atcacttgtcacaaagtgtaaagatttaattactactcatgaaagcattgtcacttgtcttttgtcggtttagataatggctttgaatatggttttggcc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33422747 |
atcacttgtcacaaagtgtaaagatttaattactactcatgaaagcattgtcacttgtcttttgtcggtttagataatggctttgaatatggttttggcc |
33422648 |
T |
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| Q |
500 |
cacttgtagtcctgtag |
516 |
Q |
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| T |
33422647 |
cacttgtagtcctgtag |
33422631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 25926820 - 25926710
Alignment:
| Q |
138 |
aaaatcaggtatattgtgtcagattgtggagctgttgggatcatacatgatgagcaagggtatgcaaaatcagcagaggatgctgtagctgatgttcttc |
237 |
Q |
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||||||||||||||| ||| ||||||| ||| || | |||||| ||||| | ||||| ||||||||| || |||||||||||||||| ||||| |||| |
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| T |
25926820 |
aaaatcaggtatattacgtcggattgtgaagcagtacgaatcatatatgataatcaaggttatgcaaaaacaccagaggatgctgtagccgatgtacttc |
25926721 |
T |
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| Q |
238 |
atgctggtata |
248 |
Q |
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| ||||||||| |
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| T |
25926720 |
aagctggtata |
25926710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 25958352 - 25958421
Alignment:
| Q |
177 |
atcatacatgatgagcaagggtatgcaaaatcagcagaggatgctgtagctgatgttcttcatgctggta |
246 |
Q |
| |
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|||||||||||| |||||| ||||||||| || |||||||||||||||| ||||| ||||| ||||||| |
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| T |
25958352 |
atcatacatgataggcaaggttatgcaaaagcaccagaggatgctgtagcagatgtacttcaagctggta |
25958421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 25886770 - 25886661
Alignment:
| Q |
139 |
aaatcaggtatattgtgtcagattgtggagctgttgggatcatacatgatgagcaagggtatgcaaaatcagcagaggatgctgtagctgatgttcttca |
238 |
Q |
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||||||||||||||| ||| ||||||| || ||| | ||||| |||| | ||||| ||||||||| || ||||||||| |||||| ||||| |||| |
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| T |
25886770 |
aaatcaggtatattgcgtcggattgtgacgcagttcgattcatatatgaaaaacaaggttatgcaaaaacaccagaggatgttgtagccgatgtacttcg |
25886671 |
T |
|
| Q |
239 |
tgctggtata |
248 |
Q |
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||||||||| |
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| T |
25886670 |
agctggtata |
25886661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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