View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_4 (Length: 442)
Name: NF9716_low_4
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 34167767 - 34168028
Alignment:
| Q |
18 |
aaaaatagtgatgttacattttgcaactattttcaatcatggttataacttatttcaacttgggcacgatgtaactcaaacacttatgttggaaatttaa |
117 |
Q |
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| T |
34167767 |
aaaaatagtgatgttacattttgcaactattttcaattatggttataacttattttaacttgggcacgatgtaaatcaaacacttatgttggaaatttaa |
34167866 |
T |
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| Q |
118 |
atcaagtactagctagaaaatcagagatgtttgaattgctgccatacttcatcactaagcaagtttattattggactaaagacaataggaggcattgtat |
217 |
Q |
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| T |
34167867 |
atcaagtactagctagaaaatcagagatgtttgaattgctgccatacttcatcactaagaaagtttattattggactaaagacaataggaggcattgtat |
34167966 |
T |
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| Q |
218 |
gaatgactttgaaccactgnnnnnnngctttaagagacaaattaaaaatgcattggcttaat |
279 |
Q |
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| T |
34167967 |
gaatgactttgaaccactgtttttttgctttaagagacaaattaaaaatgcattggcttaat |
34168028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 280 - 429
Target Start/End: Original strand, 34168060 - 34168209
Alignment:
| Q |
280 |
aactagcatacttaatgcattataagcctataaaagactgcttgtaacttcttatttatcaattgagtgactcaaatatagtgttgagcaaaatctaaca |
379 |
Q |
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| T |
34168060 |
aactagtatacttaatgcattataagcctataaaagactgcttgtaacttcttatttatcaattgagtgactcaaatatagtgttgagtaaaatctaaca |
34168159 |
T |
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| Q |
380 |
tgtatgttagatttgtgttgttattacgtcatactgatatcaatttatct |
429 |
Q |
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| T |
34168160 |
tgtatgttagatttgtgttgttattacgtcatactgatatcaatttatct |
34168209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 45486634 - 45486744
Alignment:
| Q |
89 |
taactcaaacacttatgttggaaatttaaatcaagtactagctagaaaatcagagatgtttgaattgctgccatacttcatcactaagcaagtttattat |
188 |
Q |
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||||||||||| || |||||||||||||||||||||| ||| ||||| || | | ||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
45486634 |
taactcaaacatttgtgttggaaatttaaatcaagtaatagttagaagattgaaaaagtttgaattgctgatatacttcatcattaagcaagtttattat |
45486733 |
T |
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| Q |
189 |
tggactaaaga |
199 |
Q |
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| T |
45486734 |
tggaccaaaga |
45486744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 45486855 - 45486921
Alignment:
| Q |
302 |
taagcctataaaagact--gcttgtaacttcttatttatcaattgagtgactcaaatatagtgttga |
366 |
Q |
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| T |
45486855 |
taagcccataaaaggctatgcttgtgacctctcatttatcaattgagtgaatcaaatatagtgttga |
45486921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 45486965 - 45487006
Alignment:
| Q |
386 |
ttagatttgtgttgttattacgtcatactgatatcaatttat |
427 |
Q |
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| T |
45486965 |
ttagatttgtgttgttattatgtcctgctgatatcaatttat |
45487006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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