View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_5 (Length: 433)
Name: NF9716_low_5
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 25434804 - 25434394
Alignment:
| Q |
1 |
tttgttaaaatatgtcttcagttagcactaccagagctacatcactaaactaaagtaacagaggtccaactcacagcttttgggcgcaaaacaggattcc |
100 |
Q |
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| T |
25434804 |
tttgttaaaatatgtcttcagttagcactaccagagctacatcactaaactaaagtaacagaggtccaactcacagcttttgggcgcaaaacaggattcc |
25434705 |
T |
|
| Q |
101 |
aaaggatgaagagttttcttgcagagggacttccgtctttctgaaataactccactgtggataaatttgcaagttccttagacatagaaattcatggtta |
200 |
Q |
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| T |
25434704 |
aaaggatgaagagttttcttgcagagggacttccgtctttctgaaataactccactgtggataaatttgcaagttccttagacatagaaattcatggtta |
25434605 |
T |
|
| Q |
201 |
gtgcagcagtatagcaattttgagaagattaccnnnnnnncttataataacagacaagacaacataaacaactatgtatgtaatgtgagaagtcaaagag |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25434604 |
gtgcagcagtatagcaattttgagaagattaccacacaaacttataataacagacaagacaacataaacaactatgtatgtaatgtgagaagtcaaagag |
25434505 |
T |
|
| Q |
301 |
ggagtatagggaatcaaagaaagaaagagagaaggcaatgtcaccgcctatgtaacgaattgctgagttggcaaggatgggaagagtgggaggactctac |
400 |
Q |
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||||||||||||||| ||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25434504 |
ggagtatagggaatc----aaagaaagagagagggaaatatcaccgcctatgtaactaattgctgagttggcaaggatgggaagagtgggaggactctac |
25434409 |
T |
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| Q |
401 |
tgtcttcggttatat |
415 |
Q |
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| T |
25434408 |
tgtcttcggttatat |
25434394 |
T |
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