View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9716_low_7 (Length: 409)
Name: NF9716_low_7
Description: NF9716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9716_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 24414350 - 24413967
Alignment:
| Q |
7 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414350 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
24414251 |
T |
|
| Q |
107 |
attgtttgattctcaggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaattattttctttaatcattc |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24414250 |
attgtttgattctctggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaatt-ttttctttaatcattc |
24414152 |
T |
|
| Q |
207 |
tatttgaatatgaaatgtttaaggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaattgcctggaagattaaccag |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24414151 |
tatttgaatatgaaatgtttatggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaagtgcctggaagattaaccag |
24414052 |
T |
|
| Q |
307 |
attttgttagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaataatgcgattaaactcaa |
391 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414051 |
attttgtcagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaataatgcgattaaactcaa |
24413967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 24419611 - 24419994
Alignment:
| Q |
7 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419611 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
24419710 |
T |
|
| Q |
107 |
attgtttgattctcaggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaattattttctttaatcattc |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24419711 |
attgtttgattctctggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaatt-ttttctttaatcattc |
24419809 |
T |
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| Q |
207 |
tatttgaatatgaaatgtttaaggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaattgcctggaagattaaccag |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24419810 |
tatttgaatatgaaatgtttatggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaagtgcctggaagattaaccag |
24419909 |
T |
|
| Q |
307 |
attttgttagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaataatgcgattaaactcaa |
391 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419910 |
attttgtcagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaataatgcgattaaactcaa |
24419994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 24379293 - 24378930
Alignment:
| Q |
7 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
106 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||| |
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| T |
24379293 |
atttcctggtgtagcatttccaaaagctgcatatccaaagcctccacaacatatgtagaagaatgttgtaatggagattgccatcatggaggcctttttc |
24379194 |
T |
|
| Q |
107 |
attgtttgattctcaggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaattattttc-tttaatcatt |
205 |
Q |
| |
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|| ||||||||||| ||||||||||||||||| ||||||| | ||||||| ||||||||| ||| ||||||||| || ||| ||||| ||| | || |
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| T |
24379193 |
atggtttgattctctggtggaggagactctagagtgtcctttgctcaacaaaattcaataattt--gtttcagatgta--attcttttcatttgcttata |
24379098 |
T |
|
| Q |
206 |
ctatttgaatatgaaatgtttaaggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaattgcctggaagattaacca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379097 |
aaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagatcattgagtacggataggaaaaactaatgtcaccaattgcctggaagattaacca |
24378998 |
T |
|
| Q |
306 |
gattttgttagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaa |
373 |
Q |
| |
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|||||||| |||||| ||||| | ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
24378997 |
gattttgtcagcaacattagcagtctgtactcctgtcaaacttcccataattcttccattttctgcaa |
24378930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 24402097 - 24401724
Alignment:
| Q |
7 |
atttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||| |||| |||| ||| ||||||||| |
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| T |
24402097 |
atttcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttc |
24401998 |
T |
|
| Q |
107 |
attgtttgattctcaggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaattattt----------tc- |
195 |
Q |
| |
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|| | ||||||||| | |||||||||||| || ||||||| | ||||||| |||| |||| ||| |||||||||||| ||| ||| || |
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| T |
24401997 |
atggattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataattt--gtttcagatata--attttttatatcaatcatca |
24401902 |
T |
|
| Q |
196 |
tttaatcattctatttgaatatgaaatgtttaaggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaattgcctgga |
295 |
Q |
| |
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|||| | || | |||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||| |
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| T |
24401901 |
tttacttatccaatttgaatattaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctgga |
24401802 |
T |
|
| Q |
296 |
agattaaccagattttgttagcaactttagctttttgtactcctgttatacttcccataattcttccattttctgcaa |
373 |
Q |
| |
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||||| |||||||||||| |||||| |||| | |||||||||| | ||||||||||| | ||||||||||||||| |
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|
| T |
24401801 |
agattgaccagattttgtcagcaacactagcagtcggtactcctgtcaaacttcccataacttttccattttctgcaa |
24401724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 42362490 - 42362369
Alignment:
| Q |
25 |
tccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctcaggt |
124 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| || | || || | | |
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| T |
42362490 |
tccaaaagctgcatatccgaagcatgcacaacataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtcttgttttctgct |
42362391 |
T |
|
| Q |
125 |
ggaggagactctagtgtgtcct |
146 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
42362390 |
ggaggagactctagagtgtcct |
42362369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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