View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_high_1 (Length: 546)
Name: NF9717_high_1
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_high_1 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Complemental strand, 17754519 - 17753987
Alignment:
| Q |
14 |
agggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagca |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754519 |
agggaagaaacctacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagca |
17754420 |
T |
|
| Q |
114 |
tattttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagtta |
213 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754419 |
tattttgcatcgcgtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagagtta |
17754320 |
T |
|
| Q |
214 |
ttgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcgg |
313 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754319 |
ttgctgtccccaatctttgaagaactatctaacaacctgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcgg |
17754220 |
T |
|
| Q |
314 |
acatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754219 |
acatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaa |
17754120 |
T |
|
| Q |
414 |
cttggttgagactataaaatggaaaagnnnnnnntaatatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcat |
513 |
Q |
| |
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||||||| |||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754119 |
cttggttaagaccataaaatggaaaagaaaagaataataagacctaccaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcat |
17754020 |
T |
|
| Q |
514 |
cttctcgctccacatactcctcattttcctcaa |
546 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
17754019 |
cttctcgctccacatactcctcattttcctcaa |
17753987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Complemental strand, 17763506 - 17762974
Alignment:
| Q |
14 |
agggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagca |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763506 |
agggaagaaacctacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagca |
17763407 |
T |
|
| Q |
114 |
tattttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagtta |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763406 |
tattttgcatcgcgtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagagtta |
17763307 |
T |
|
| Q |
214 |
ttgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcgg |
313 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763306 |
ttgctgtccccaatctttgaagaactatctaacaacctgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcgg |
17763207 |
T |
|
| Q |
314 |
acatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaa |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763206 |
acatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaa |
17763107 |
T |
|
| Q |
414 |
cttggttgagactataaaatggaaaagnnnnnnntaatatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcat |
513 |
Q |
| |
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||||||| |||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763106 |
cttggttaagaccataaaatggaaaagaaaagaataataagacctaccaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcat |
17763007 |
T |
|
| Q |
514 |
cttctcgctccacatactcctcattttcctcaa |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
17763006 |
cttctcgctccacatactcctcattttcctcaa |
17762974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 38 - 544
Target Start/End: Complemental strand, 15736446 - 15735940
Alignment:
| Q |
38 |
aaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggcgtgacattacc |
137 |
Q |
| |
|
||||||||||||| | ||||| ||| || || ||||||| || ||||| ||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
15736446 |
aaggcctcacaaagtggttcaacagttcaattgaaaaattcggattcttaagaatgaaaataatatgttacaagcatattttgaatggcatgacattacc |
15736347 |
T |
|
| Q |
138 |
ttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaatatttgaaaaa |
237 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| || |
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| T |
15736346 |
ttcaactggacttgaggcatgactcatcatatgtccatttgctaccacttcttcggaaaatggtgatccggagttattgctgtccccaatctttgaagaa |
15736247 |
T |
|
| Q |
238 |
ctatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcag |
337 |
Q |
| |
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|| ||||| ||| |||| |||||||||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736246 |
ctttctaaaaacctgtcttcctgttcaggaacatcgcggcagggagatgctggcagataacatagctcttcctcggacatatcagagtcgctgaaagcag |
15736147 |
T |
|
| Q |
338 |
gatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttgagactataaaatggaa |
437 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15736146 |
gatccttctctactgtctcaatgtcaacgtcctcgtcttcattgacatcagatccttttacctgcaaggatatgaacttggttgagaccataaaatggaa |
15736047 |
T |
|
| Q |
438 |
aagnnnnnnntaatatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcat |
537 |
Q |
| |
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|| ||||| | ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15736046 |
aatgaaagaataataagtactatgaccatataacgttcacataccttatcagtctcagtattcaaatcaaattcatcttctcgctccacatactcctcat |
15735947 |
T |
|
| Q |
538 |
tttcctc |
544 |
Q |
| |
|
||||||| |
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|
| T |
15735946 |
tttcctc |
15735940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 17740532 - 17740109
Alignment:
| Q |
15 |
gggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcat |
114 |
Q |
| |
|
||||||||||| | ||||||| ||||||| ||||| | ||||| ||| || || ||| |||| || ||||| |||||||||||| | ||||||||||| |
|
|
| T |
17740532 |
gggaagaaacctaaactcata--aaggcctgacaaagtgtttcaacagttcaattaaaacattgggattcttaagaatgaaaatactccgttacaagcat |
17740435 |
T |
|
| Q |
115 |
attttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttat |
214 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17740434 |
attttgcatggtgtgacattaccttcaagtggacttgaggcatgactcatcatgtgtccatttgctaccacttcttctgaaaatggtgatccagagttat |
17740335 |
T |
|
| Q |
215 |
tgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcgga |
314 |
Q |
| |
|
|| |||||||||| |||||| |||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
17740334 |
tgctgtccccaatctttgaagaactatctaaaagcctgtcttcctgttcaggaacatcgggaatgggagatactggtagataacgtagctcttcctcaga |
17740235 |
T |
|
| Q |
315 |
catatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaac |
414 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17740234 |
catatcagagtcgctgaaattaggatccttctcgactgtcacaatgtcaacgtcctcatcttcattgacatcagatccttttacctgcaaggatatgaac |
17740135 |
T |
|
| Q |
415 |
ttggttgagactataaaatggaaaag |
440 |
Q |
| |
|
||| ||||||| |||||| ||||||| |
|
|
| T |
17740134 |
ttgattgagaccataaaaaggaaaag |
17740109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 448 - 546
Target Start/End: Complemental strand, 17739931 - 17739833
Alignment:
| Q |
448 |
taatatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaa |
546 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739931 |
taataagacctatgaccatataatgttcacatacattatcagtgtcaggattcaaatcaaattcatcttctcgctccacatactcctcattttcctcaa |
17739833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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