View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9717_high_4 (Length: 327)
Name: NF9717_high_4
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_high_4 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 42415245 - 42414938
Alignment:
| Q |
1 |
cgactgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcacc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
42415245 |
cgaccgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctacaagcacc |
42415146 |
T |
|
| Q |
101 |
ttcgacagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42415145 |
ttcgacagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctg |
42415046 |
T |
|
| Q |
201 |
cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42415045 |
cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaactc |
42414946 |
T |
|
| Q |
301 |
ctcatctg |
308 |
Q |
| |
|
|||||||| |
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| T |
42414945 |
ctcatctg |
42414938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 15206 - 14902
Alignment:
| Q |
1 |
cgactgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcacc |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
15206 |
cgaccgacattcggatatgatac---caaactccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctataagcacc |
15110 |
T |
|
| Q |
101 |
ttcgacagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctg |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15109 |
ttcgacagtcctaatcttccaagccaagagatgaaatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgcggctg |
15010 |
T |
|
| Q |
201 |
cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15009 |
cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaatagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaactt |
14910 |
T |
|
| Q |
301 |
ctcatctg |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
14909 |
ctcatctg |
14902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 53920266 - 53919963
Alignment:
| Q |
8 |
cattcggatatgatactaccaaactccgcttgattgct---attcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcg |
104 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
53920266 |
cattcagatatgagactaccaaactccgcttgattgctgctattcctatcaaaaatgctatcaaacactagtttgcaatccagttctataagcaccttcg |
53920167 |
T |
|
| Q |
105 |
acagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctt |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
53920166 |
acagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttcttcttctcgtgggagaggtttgccttcataccaggttgtagctgcctt |
53920067 |
T |
|
| Q |
205 |
tacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctca |
304 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
53920066 |
tacgaacagacctcgatgattccgaatgcacatacctatcccaaaacagttttgctcctcgaacatggctgcatccacgttgcatttaacaaactcctca |
53919967 |
T |
|
| Q |
305 |
tctg |
308 |
Q |
| |
|
|||| |
|
|
| T |
53919966 |
tctg |
53919963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 1930090 - 1929998
Alignment:
| Q |
5 |
tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagc |
97 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| |||| || |||||||||||||||||| |
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|
| T |
1930090 |
tgacaatcggatataatactaccaaactccgattgattcatattcctatcaactatgctatcaaccactagcttacaatctagttctataagc |
1929998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 26924420 - 26924303
Alignment:
| Q |
5 |
tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcg |
104 |
Q |
| |
|
||||| || ||||| || ||||||||||| |||| ||| |||||||||||| ||||||| || ||||| | ||||||||||||||||||||||||| |
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| T |
26924420 |
tgacaatcagatataatgctaccaaactctacttggttggtattcctatcaactatgctataaattactagcgtacaatctagttctataagcaccttcg |
26924321 |
T |
|
| Q |
105 |
acagtcctaatctgccaa |
122 |
Q |
| |
|
| || |||||||| |||| |
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|
| T |
26924320 |
ataggcctaatctaccaa |
26924303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 35581543 - 35581743
Alignment:
| Q |
5 |
tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcg |
104 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| ||| |||| | |||| ||||| |||||||||||||||| || |||||||||||||||| ||||||| | |
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|
| T |
35581543 |
tgacattcatatatgatattaccaaagtccactttattggtgttcccatcaattatgctatcaactactacttggcaatctagttctatatgcacctttg |
35581642 |
T |
|
| Q |
105 |
acagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctt |
204 |
Q |
| |
|
| ||||| || |||||||| || || |||||||| ||||| |||||||| |||||| |||| |||| |||||||||| ||| ||||||||||||| |
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|
| T |
35581643 |
atggtcctcatagaccaagccaataaatagcatcatgtaatcctactgcttccgcttcttttgggggaggattgccttcatgccaagttgtggctgcctt |
35581742 |
T |
|
| Q |
205 |
t |
205 |
Q |
| |
|
| |
|
|
| T |
35581743 |
t |
35581743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 29370340 - 29370229
Alignment:
| Q |
36 |
cttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatggc |
135 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||| || ||||||||||||||||||||||| |||| |||||||| |||||||| | || || |
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|
| T |
29370340 |
cttgattagtattcctatcaattatgctatcaaccactagcttacaatctagttctataagcacctttgacaagcctaatctaccaagccaagaaatagc |
29370241 |
T |
|
| Q |
136 |
atcatgcaatcc |
147 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
29370240 |
atcatgtaatcc |
29370229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 1083075 - 1083197
Alignment:
| Q |
5 |
tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc |
103 |
Q |
| |
|
||||| || |||||||||| |||||||||| |||| ||| | |||||||| | |||||||||| || || ||| |||||||||||||||| |||||| |
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|
| T |
1083075 |
tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt |
1083174 |
T |
|
| Q |
104 |
gacagtcctaatctgccaagcca |
126 |
Q |
| |
|
|| | |||||||| |||||||| |
|
|
| T |
1083175 |
gataagcctaatctaccaagcca |
1083197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 1085715 - 1085837
Alignment:
| Q |
5 |
tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc |
103 |
Q |
| |
|
||||| || |||||||||| |||||||||| |||| ||| | |||||||| | |||||||||| || || ||| |||||||||||||||| |||||| |
|
|
| T |
1085715 |
tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt |
1085814 |
T |
|
| Q |
104 |
gacagtcctaatctgccaagcca |
126 |
Q |
| |
|
|| | |||||||| |||||||| |
|
|
| T |
1085815 |
gataagcctaatctaccaagcca |
1085837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 31385930 - 31385999
Alignment:
| Q |
22 |
actaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttct |
91 |
Q |
| |
|
|||||| ||||||| ||||||| | |||||||||| |||||||||||| |||| ||||| ||||||||| |
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|
| T |
31385930 |
actaccgaactccgtttgattggtgttcctatcaagaatgctatcaaccactagcttgcagtctagttct |
31385999 |
T |
|
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