View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9717_low_11 (Length: 250)
Name: NF9717_low_11
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36676610 - 36676841
Alignment:
| Q |
1 |
attcaaacccttctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676610 |
attcaaacccttctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaat |
36676709 |
T |
|
| Q |
101 |
agtatataaaaaataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676710 |
agtatataaaaaataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggat |
36676809 |
T |
|
| Q |
201 |
gatgaagtaattaattaaaaaatattatacaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36676810 |
gatgaagtaattaattaaaaaatattatacaa |
36676841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36686692 - 36686923
Alignment:
| Q |
1 |
attcaaacccttctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36686692 |
attcaaacccttctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaat |
36686791 |
T |
|
| Q |
101 |
agtatataaaaaataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36686792 |
agtatataaaaaataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggat |
36686891 |
T |
|
| Q |
201 |
gatgaagtaattaattaaaaaatattatacaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36686892 |
gatgaagtaattaattaaaaaatattatacaa |
36686923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University