View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_12 (Length: 243)
Name: NF9717_low_12
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16557961 - 16557745
Alignment:
| Q |
1 |
tcaaattcatgtattttgctcgaaaatcaagctgtgcatcaattatgaattcgttaaataaagttaacaaacacaccagctaaaaataattccaaaatcc |
100 |
Q |
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| T |
16557961 |
tcaaattcatgtattttgctcgaaaatcaagctgtgcatcaattatgaattcgttaaataaagttaacaaacacaccaactaaaaataattccaaaatcc |
16557862 |
T |
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| Q |
101 |
taatnnnnnnntagaagctatgaacagacacacgacactggtagtagtaattaacgatgatgactaataaaaatagaagctatgaagactaacttaagtt |
200 |
Q |
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|||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16557861 |
taat--aaaaatagaagctatgaacagacatacaacactg---gtagtaattaacgatgatgactaataaaaatagaagctatgaagactaacttaagtt |
16557767 |
T |
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| Q |
201 |
aacaatgatgtatgcatgtgtc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16557766 |
aacaatgatgtatgcatgtgtc |
16557745 |
T |
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