View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_13 (Length: 242)
Name: NF9717_low_13
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 42392740 - 42392515
Alignment:
| Q |
17 |
aaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacatataaaatcagaat |
116 |
Q |
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| T |
42392740 |
aaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacatataaaatcaaaat |
42392641 |
T |
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| Q |
117 |
gaatacttgtatttagatgtgtgctacttgaagtttagtctaaataatttatttagctacactaaataaaaatggaagagaaatttgttttcatttgtct |
216 |
Q |
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| T |
42392640 |
gaatacttgtatttagatgtgggctacttgaagtttagtctcaataatttatttagctacactaaataaaaatggaagagaaatttgttttcatttgtct |
42392541 |
T |
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| Q |
217 |
gaaaagtttgaagatgagccaattat |
242 |
Q |
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| T |
42392540 |
gaaaagtttgaagatgagccaattat |
42392515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 42386808 - 42386641
Alignment:
| Q |
82 |
aaaaacattattacatcaacatataaaatcagaatgaatacttgtatttagatgtgtgctacttgaagtttagtct-aaataatttatttagctacact- |
179 |
Q |
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|||||||||||||||| | || |||||||| ||||||| |||| ||| ||||||| ||||| | ||||||||| |||||||||||||||||||||| |
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| T |
42386808 |
aaaaacattattacattagcaaataaaatcggaatgaaaacttacattaagatgtggtttactttaggtttagtcttaaataatttatttagctacactg |
42386709 |
T |
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| Q |
180 |
------aaat---aaaaatggaagagaaatttgttttcatttgtctgaaaagtttgaagatgagccaa |
238 |
Q |
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| T |
42386708 |
tataaaaaataagaaaaatggaagagaattttgttttcatttgtcgaaaaaatttgaagatgaaccaa |
42386641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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