View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_2 (Length: 512)
Name: NF9717_low_2
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_2 |
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| [»] scaffold0232 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 3 - 502
Target Start/End: Complemental strand, 42392494 - 42391989
Alignment:
| Q |
3 |
acatgcttctttttgatacatacggtgtattcttcagtcttaaaatttaagcacatatttaccttttaaaattcataaatattactcatttgaaatggcc |
102 |
Q |
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||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392494 |
acatgcttcttttcgatacatacagtgtattcttctgtcttaaaatttaagcacatatttaccttttaaaattcataaatattactcatttgaaatggcc |
42392395 |
T |
|
| Q |
103 |
atgtgtattgttagtagtgttgcgggaaagaggttcatacc-aggtgttgagtgacctaatggatatacttcttgttaagttgttataactaggagtgtg |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42392394 |
atgtgtattgttagcagtgttgcgggaaagaggttcataccaaggtgttgagtgacgtaatggttatacttcttgttaagttgttataactaggagtgtg |
42392295 |
T |
|
| Q |
202 |
catggttcataaaccaaaccaaaccatatccaatttatggtttggtttcttaaactgtttcagaaaaaaccaa-nnnnnnnacgaaacagttcaggtttg |
300 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||| |
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| T |
42392294 |
catggttcataaatcaaaccaaaccatattcaatttatggtttggtttcttaacctgtttcagaaaaaaccaattttttttacgaaatagttcaagtttg |
42392195 |
T |
|
| Q |
301 |
ctttgggtccggttcagaaccggtttgtgtt---nnnnnnngcggtttatttattttaccagtttctcaaacagtttccatggcttcccttcttagcttc |
397 |
Q |
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||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42392194 |
ttttgggtccggttcagaactggtttgcattaaaaaaaaaagcggtttattcattttaccagtttctcaaacagttttcatggcttcccttcttagcttc |
42392095 |
T |
|
| Q |
398 |
ttgaagtttatcttgccttttctaaggttgttttaaggatgttagttctaggtcattttgatgatgtttcattagt-atgtaagtaaatgattaatttag |
496 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| | ||||| |
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| T |
42392094 |
ttgaagtttatcttgccttgtctaaggtagttttaaggatgttagttctaggtcattttgatgatgtttcattagtaatttgagtaaatgatcactttag |
42391995 |
T |
|
| Q |
497 |
tctctg |
502 |
Q |
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|||||| |
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| T |
42391994 |
tctctg |
42391989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 4010623 - 4010590
Alignment:
| Q |
192 |
taggagtgtgcatggttcataaaccaaaccaaac |
225 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
4010623 |
taggggtgtgcatggttcataaaccaaaccaaac |
4010590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 21423 - 21452
Alignment:
| Q |
198 |
tgtgcatggttcataaaccaaaccaaacca |
227 |
Q |
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| T |
21423 |
tgtgcatggttcataaaccaaaccaaacca |
21452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 7528122 - 7528163
Alignment:
| Q |
184 |
gttataactaggagtgtgcatggttcataaaccaaaccaaac |
225 |
Q |
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| T |
7528122 |
gttataactaggggtgtgcatgattcatgaaccaaaccaaac |
7528163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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